Browse Element(s) Details


OsAffx.17197.1.S1_at

Description tigr:9636.m02756
TID=OsAffx.17197.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2788011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27850Os.7897.1.S1_at11/118+16849431..16852585Endothelial differentiation-related factor 1, putative, expressed
LOC_Os08g27860Os.11625.1.S1_at11/118+16855631..16858524expressed protein
LOC_Os08g27860OsAffx.5959.1.S1_x_at9/118+16855631..16858524expressed protein
LOC_Os08g27870OsAffx.29387.1.S1_at11/118+16861751..16864039hypothetical protein
LOC_Os08g27880OsAffx.17197.1.S1_at11/118+16864916..16865233hypothetical protein
LOC_Os08g27890NANA8+16868352..16870074retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900Os.53142.1.S1_at3/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.27522.1.S1_x_at2/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.16187.1.S1_at1/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.3613.1.S1_x_at1/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27910NANA8+16881750..16883183retrotransposon protein, putative, unclassified
LOC_Os08g27920NANA8+16887733..16889801retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17197.1.S1_at--1162--751Chr08:16864967..16864991 (25 bp)
ATGTGTCGGGACCATCGTGCCAAGC
LOC_Os08g27880
OsAffx.17197.1.S1_at--907--4311Chr08:16864978..16865002 (25 bp)
CCATCGTGCCAAGCCTAAGGTGAAG
LOC_Os08g27880
OsAffx.17197.1.S1_at--777--1131Chr08:16865013..16865037 (25 bp)
AGTCGGAGTCGGGACGCGAAGACAA
LOC_Os08g27880
OsAffx.17197.1.S1_at--1112--1591Chr08:16865045..16865069 (25 bp)
AGCTGCCAGCCAGCAATGCGTGCGA
LOC_Os08g27880
OsAffx.17197.1.S1_at--1014--1471Chr08:16865056..16865080 (25 bp)
AGCAATGCGTGCGACTATGGCTGGC
LOC_Os08g27880
OsAffx.17197.1.S1_at--351--10111Chr08:16865071..16865095 (25 bp)
TATGGCTGGCGGTTGTCTGTGCCTC
LOC_Os08g27880
OsAffx.17197.1.S1_at--1108--8351Chr08:16865078..16865102 (25 bp)
GGCGGTTGTCTGTGCCTCTCCCTAA
LOC_Os08g27880
OsAffx.17197.1.S1_at--1140--7711Chr08:16865120..16865144 (25 bp)
GGGTGTCCTCATGGGCAAAATTCTA
LOC_Os08g27880
OsAffx.17197.1.S1_at--469--3271Chr08:16865135..16865159 (25 bp)
CAAAATTCTAGGGTGGTCCAGGGAT
LOC_Os08g27880
OsAffx.17197.1.S1_at--253--8991Chr08:16865164..16865188 (25 bp)
TGAACCGCCCATTGGAACTGCCACT
LOC_Os08g27880
OsAffx.17197.1.S1_at--824--8511Chr08:16865176..16865200 (25 bp)
TGGAACTGCCACTGCTAGCGACGGG
LOC_Os08g27880
Target Sequence 
ATGTGTCGGGACCATCGTGCCAAGCCTAAGGTGAAGGTGGAGTCGGAGTCGGAGTCGGGACGCGAAGACAAAGGAGGCAG
CTGCCAGCCAGCAATGCGTGCGACTATGGCTGGCGGTTGTCTGTGCCTCTCCCTAACCCTAGCACAGCTCAGGGGGTGTC
CTCATGGGCAAAATTCTAGGGTGGTCCAGGGATCACCTGAACCGCCCATTGGAACTGCCACTGCTAGCGACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis