Browse Element(s) Details


Os.21286.2.S1_at

Description gb:NM_188891.1
DB_XREF= gi:34904865
GEN=OJ1484_G09.27
TID=Os.21286.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21286 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative SunNOL1NOP nucleolar protein (OJ1484_G09.27), mRNA.
PROD=putative SunNOL1NOP nucleolar protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2782410/11NOL1/NOP2/sun family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27790NANA8+16794670..16797680retrotransposon protein, putative, unclassified
LOC_Os08g27800NANA8+16798779..16804382retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27810OsAffx.29386.2.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_x_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27824Os.21286.1.S1_at11/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_x_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27840Os.6248.1.S1_s_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.10454.1.S1_a_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.45901.1.S1_x_at2/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27850Os.7897.1.S1_at11/118+16849431..16852585Endothelial differentiation-related factor 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21286.2.S1_at--341--7511Chr08:16824234..16824475 (25 bp)
GTGGTTGGACCGTTGATGCACATCA
LOC_Os08g27824
Os.21286.2.S1_at--831--8571Chr08:16824233..16824474 (25 bp)
TGGTTGGACCGTTGATGCACATCAT
LOC_Os08g27824
Os.21286.2.S1_at--706--7911Chr08:16824232..16824473 (25 bp)
GGTTGGACCGTTGATGCACATCATG
LOC_Os08g27824
Os.21286.2.S1_at--1121--6611Chr08:16824231..16824472 (25 bp)
GTTGGACCGTTGATGCACATCATGA
LOC_Os08g27824
Os.21286.2.S1_at--62--10851Chr08:16824230..16824471 (25 bp)
TTGGACCGTTGATGCACATCATGAA
LOC_Os08g27824
Os.21286.2.S1_at--1138--1271Chr08:16820932..16821337 (25 bp)
AGATCTCACAATAAGCTAAAATCCA
LOC_Os08g27824
Os.21286.2.S1_at--801--6411Chr08:16820931..16821336 (25 bp)
GATCTCACAATAAGCTAAAATCCAT
LOC_Os08g27824
Os.21286.2.S1_at--373--451Chr08:16820930..16821335 (25 bp)
ATCTCACAATAAGCTAAAATCCATA
LOC_Os08g27824
Os.21286.2.S1_at--999--9511Chr08:16820929..16821334 (25 bp)
TCTCACAATAAGCTAAAATCCATAA
LOC_Os08g27824
Os.21286.2.S1_at--777--3071Chr08:16820923..16820944 (22 bp)
AATAAGCTAAAATCCATAACATGCA
LOC_Os08g27824
Target Sequence 
GTGGTTGGACCGTTGATGCACATCATGAAGAAAGAAAGGGTTTGTACATTGGTCAAGGGATCACTGCAATGTCAAGGTCC
GGAATATTTCGTGTTCCTCATGGAGTTGCAGTGGAGATGACTGAGAGGGTGTACAAGCTCCCATCTTTCAATGATGTGCT
CGAAGGGGAGATATTTCTTCAGAATCTTCCAAGTGTTGTGGCTGCTCGTGTCCTTGATCCCCAGCCTGGAGAGCGGATTC
TGGACATGTGTGCTGCCCCAGGTGGGAAAACAACAGCAATTGCTATCCTGATGAAAGACCAAGGAGAAATTATTGCCCTT
GATAGATCTCACAATAAGCTAAAATCCATAACATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21286.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis