Browse Element(s) Details


Os.21286.2.S1_x_at

Description gb:NM_188891.1
DB_XREF= gi:34904865
GEN=OJ1484_G09.27
TID=Os.21286.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21286 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative SunNOL1NOP nucleolar protein (OJ1484_G09.27), mRNA.
PROD=putative SunNOL1NOP nucleolar protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2782410/11NOL1/NOP2/sun family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27790NANA8+16794670..16797680retrotransposon protein, putative, unclassified
LOC_Os08g27800NANA8+16798779..16804382retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27810OsAffx.29386.2.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_x_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27824Os.21286.1.S1_at11/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_x_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27840Os.6248.1.S1_s_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.10454.1.S1_a_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.45901.1.S1_x_at2/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27850Os.7897.1.S1_at11/118+16849431..16852585Endothelial differentiation-related factor 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21286.2.S1_x_at--737--3411Chr08:16825010..16825034 (25 bp)
CAGAGTCGGTTCTTAGAGGAGCCCA
LOC_Os08g27824
Os.21286.2.S1_x_at--449--971Chr08:16824555..16825018 (25 bp)
AGGAGCCCAGGTGTACATCCCAGGA
LOC_Os08g27824
Os.21286.2.S1_x_at--871--531Chr08:16824539..16824563 (25 bp)
ATCCCAGGAGTTTTAGCTTGCAGCT
LOC_Os08g27824
Os.21286.2.S1_x_at--830--8571Chr08:16824233..16824474 (25 bp)
TGGTTGGACCGTTGATGCACATCAT
LOC_Os08g27824
Os.21286.2.S1_x_at--98--6451Chr08:16824176..16824200 (25 bp)
GATCACTGCAATGTCAAGGTCCGGA
LOC_Os08g27824
Os.21286.2.S1_x_at--406--5231Chr08:16824153..16824177 (25 bp)
GAATATTTCGTGTTCCTCATGGAGT
LOC_Os08g27824
Os.21286.2.S1_x_at--1014--7031NONE
GTACAAGCTCCCATCTTTCAATGAT
NONE
Os.21286.2.S1_x_at--216--3071Chr08:16821850..16821874 (25 bp)
AATCTTCCAAGTGTTGTGGCTGCTC
LOC_Os08g27824
Os.21286.2.S1_x_at--886--7911Chr08:16821402..16821426 (25 bp)
GGATTCTGGACATGTGTGCTGCCCC
LOC_Os08g27824
Os.21286.2.S1_x_at--818--10411Chr08:16821327..16821351 (25 bp)
TTATTGCCCTTGATAGATCTCACAA
LOC_Os08g27824
Os.21286.2.S1_x_at--67--1491Chr08:16820886..16820910 (25 bp)
AGCAACACTTCTTCCAGTTTCTTGG
LOC_Os08g27824
Target Sequence 
CAGAGTCGGTTCTTAGAGGAGCCCAGGTGTACATCCCAGGAGTTTTAGCTTGCAGCTCACATGTTGAAAAGGGTGACAAA
GTTGCAGTGTCGGTTGCTATTGAACAACCTGCTGAGGATGGTGGTTGGACCGTTGATGCACATCATGAAGAAAGAAAGGG
TTTGTACATTGGTCAAGGGATCACTGCAATGTCAAGGTCCGGAATATTTCGTGTTCCTCATGGAGTTGCAGTGGAGATGA
CTGAGAGGGTGTACAAGCTCCCATCTTTCAATGATGTGCTCGAAGGGGAGATATTTCTTCAGAATCTTCCAAGTGTTGTG
GCTGCTCGTGTCCTTGATCCCCAGCCTGGAGAGCGGATTCTGGACATGTGTGCTGCCCCAGGTGGGAAAACAACAGCAAT
TGCTATCCTGATGAAAGACCAAGGAGAAATTATTGCCCTTGATAGATCTCACAATAAGCTAAAATCCATAACATGCAAGA
TGGAGCAGCAGCAACACTTCTTCCAGTTTCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21286.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis