Browse Element(s) Details


Os.21424.1.S1_at

Description gb:AK062643.1
DB_XREF= gi:32972661
TID=Os.21424.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21424 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome5,At5g05950 (P0523A04.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-D11, full insert sequence.
FL= gb:AK062643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g136008/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13560OsAffx.25367.1.S1_at2/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13560OsAffx.13241.1.S1_at1/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13560Os.51887.1.S1_x_at1/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13570OsAffx.16246.1.S1_at11/117+7783891..7784409hypothetical protein
LOC_Os07g13580Os.24085.1.S1_x_at11/117+7785085..7787103Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os07g13590Os.26753.1.S1_at11/117+7788517..7793327expressed protein
LOC_Os07g13600Os.21424.1.S1_at8/117+7794294..7795285expressed protein
LOC_Os07g13600OsAffx.9136.1.S1_x_at1/117+7794294..7795285expressed protein
LOC_Os07g13610OsAffx.19542.3.S1_x_at3/117+7806884..7810792retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g13634Os.31358.1.S1_at11/117+7813746..7830553UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13634Os.28943.1.S1_x_at1/117+7813746..7830553UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21424.1.S1_at--541--8871Chr07:7794773..7794797 (25 bp)
TGATGATGGCGCTCGTCAACGTCGT
LOC_Os07g13600
Os.21424.1.S1_at--489--633Chr07:7794657..7794681 (25 bp)
ATGCTCATCTACATCGGCATCGTCT
LOC_Os07g13600
Os.21424.1.S1_at--554--4351Chr07:7794611..7794635 (25 bp)
CCAACCACCGGATCAACAACTGAAG
LOC_Os07g13600
Os.21424.1.S1_at--1159--2191Chr07:7794596..7794620 (25 bp)
ACAACTGAAGCGCAGCAATGCTAGT
LOC_Os07g13600
Os.21424.1.S1_at--251--9171Chr07:7794522..7794546 (25 bp)
TGCCGACACGGCGACATTGTATATA
LOC_Os07g13600
Os.21424.1.S1_at--33--3231Chr07:7794489..7794513 (25 bp)
CAAGTGTATGCAGCTTGTGTGTTCT
LOC_Os07g13600
Os.21424.1.S1_at--1022--7411Chr07:7794471..7794495 (25 bp)
GTGTTCTTGGAGTTACCTGCTAATT
LOC_Os07g13600
Os.21424.1.S1_at--1116--10191NONE
TATTTCTTCCTTGCAACGTTGATAG
NONE
Os.21424.1.S1_at--81--6531NONE
GATTTGTTGTGATGTGCTTTGGTCA
NONE
Os.21424.1.S1_at--20--4351NONE
CCAGCTGCTGGTTGAAGTGATACCA
NONE
Os.21424.1.S1_at--1117--6471Chr07:7794312..7794336 (25 bp)
GATACCAGCTCAGATTCTTCGATTC
LOC_Os07g13600
Target Sequence 
TGATGATGGCGCTCGTCAACGTCGTGCAGGTCAAGCTCGGCCGCCTCGGCTGCGGCGCCGGCGGCGCCGCCGCGTGGGGC
GCCGTCGTGCCGCTCGTCTCGCTCGTGCCCACCGCCATGCTCATCTACATCGGCATCGTCTTCTACGCCTTCACCCGCTA
GCCCAACCACCGGATCAACAACTGAAGCGCAGCAATGCTAGTATTGATTTTTTGCTTGTGATTTTGAGAGATCTAGATGA
TGCTGCATTGCTGCCGACACGGCGACATTGTATATACAACTATGCAAGTGTATGCAGCTTGTGTGTTCTTGGAGTTACCT
GCTAATTACCTAANTTAATATGTTCGATGTTTTTTATTTCTTCCTTGCAACGTTGATAGATTTGTTGTGATGTGCTTTGG
TCAAGTACCAAGAAGATTGAAGTCATGCAGTGATGAAACTTGAGTACCAGCTGCTGGTTGAAGTGATACCAGCTCAGATT
CTTCGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis