Browse Element(s) Details


Os.21468.1.S1_at

Description gb:AK104036.1
DB_XREF= gi:32989245
TID=Os.21468.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.21468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G12, full insert sequence.
FL= gb:AK060975.1 gb:AK104036.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1863011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18560Os.57041.1.S1_at11/1112+10729706..10730828pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g18570OsAffx.19730.1.S1_at11/1112+10735227..10735637hypothetical protein
LOC_Os12g18590OsAffx.31799.1.S1_at11/1112+10737739..10740929hypothetical protein
LOC_Os12g18600OsAffx.19542.3.S1_x_at7/1112+10743855..10747359retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18600OsAffx.21754.1.S1_x_at1/1112+10743855..10747359retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18610NANA12+10748546..10749208retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18620NANA12+10751824..10752060retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18630Os.21468.1.S1_at11/1112+10754001..10760219expressed protein
LOC_Os12g18640Os.8399.1.S1_at11/1112+10763904..10766326pentatricopeptide, putative, expressed
LOC_Os12g18650Os.11875.1.S1_a_at11/1112+10768344..10772796regulator of chromosome condensation, putative, expressed
LOC_Os12g18660OsAffx.19731.1.S1_at9/1112+10781674..10783543hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21468.1.S1_at--537--7351Chr12:10754625..10754649 (25 bp)
GTGAATCATCGAGACGCACATGGCT
LOC_Os12g18630
Os.21468.1.S1_at--587--8851Chr12:10754588..10754612 (25 bp)
TGATCCACAGTACTCAGATCGGCTG
LOC_Os12g18630
Os.21468.1.S1_at--435--9651Chr12:10754575..10754599 (25 bp)
TCAGATCGGCTGCTGAGAGCATATA
LOC_Os12g18630
Os.21468.1.S1_at--1130--2331Chr12:10754550..10754574 (25 bp)
AAAGACCAGTCGAGGTTGCTGGAGA
LOC_Os12g18630
Os.21468.1.S1_at--411--6351Chr12:10754494..10754518 (25 bp)
GATGCGATTGTATCTGGCCTTGGTC
LOC_Os12g18630
Os.21468.1.S1_at--165--7151Chr12:10754365..10754389 (25 bp)
GTCTAATGCTGGAACAATTTTGCTT
LOC_Os12g18630
Os.21468.1.S1_at--400--6691Chr12:10754216..10754240 (25 bp)
GTTCAGAACTGGAGGCCCTTTACCA
LOC_Os12g18630
Os.21468.1.S1_at--832--6211Chr12:10754205..10754229 (25 bp)
GAGGCCCTTTACCATTTTGTATCTT
LOC_Os12g18630
Os.21468.1.S1_at--722--10311Chr12:10754179..10754203 (25 bp)
TTTCTTCTCGCTTTCTGATAAGAAT
LOC_Os12g18630
Os.21468.1.S1_at--327--3191Chr12:10754146..10754170 (25 bp)
CAATTTCTTGTACTGTTGTGAGCCA
LOC_Os12g18630
Os.21468.1.S1_at--296--6631Chr12:10754132..10754156 (25 bp)
GTTGTGAGCCAAGTAGACTCGGCAT
LOC_Os12g18630
Target Sequence 
GTGAATCATCGAGACGCACATGGCTTGGGGAGGAAGCTGATCCACAGTACTCAGATCGGCTGCTGAGAGCATATAAAAGA
CCAGTCGAGGTTGCTGGAGANCAACAAGATTCAAGGTGGTTTATATCGAAGGATGCGATTGTATCTGGCCTTGGTCTTCT
CGGCATCAAGCAAGGTGGAACAGAAGCTGCATTGTCCAAGCCCCGCAGGAAGAGAGTTGTCCGAAAGAAAGTTGCCTCAA
CCTGAATTTAGTTGGATGTTGTCTAATGCTGGAACAATTTTGCTTTAGTTCCACTACGCCGTATTGAGTTCTACCCAGCA
AGGCGAACGNGGGAAACCNTAGTTGGCAGCCAGCCTTGCAGTCTGTCGTGGAAGGCATCGAAGCGGTGGTGGTGGTCATA
ACTGGGAGGGTTCAGAACTGGAGGCCCTTTACCATTTTGTATCTTTTTTCTTCTCGCTTTCTGATAAGAATTGNCATCCC
AATTTCTTGTACTGTTGTGAGCCAAGTAGACTCGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis