Browse Element(s) Details


Os.21574.1.S1_a_at

Description gb:AK120399.1
DB_XREF= gi:37990022
TID=Os.21574.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21574 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-311-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088D17, full insert sequence.
FL= gb:AK120399.1 gb:AK120903.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4666011/11Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46610Os.53765.1.S1_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46610Os.5421.1.S1_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46610Os.5421.1.S1_s_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46620Os.38764.1.S1_x_at5/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46620Os.10731.1.A1_a_at2/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46620Os.45173.1.S1_x_at2/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46630NANA3+26341863..26343734retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46640Os.8039.1.S1_at11/113+26345472..26346656Deoxyuridine 5'-triphosphate nucleotidohydrolase, putative, expressed
LOC_Os03g46650Os.10.1.S1_s_at11/113+26347808..26355758Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os03g46650OsAffx.25583.1.S1_at11/113+26347808..26355758Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os03g46660Os.21574.1.S1_a_at11/113+26356927..26359742Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g46674NANA3+26367389..26368943transposon protein, putative, unclassified
LOC_Os03g46690OsAffx.3534.1.S1_at11/113+26374411..26376763F-box domain containing protein
LOC_Os03g46710Os.50529.1.S1_x_at11/113+26382594..26387978FYVE zinc finger family protein, expressed
LOC_Os03g46710OsAffx.25584.1.S1_at8/113+26382594..26387978FYVE zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21574.1.S1_a_at--588--10211Chr03:26357464..26357488 (25 bp)
TATTAACCATTTTATCCTCCACACA
LOC_Os03g46660
Os.21574.1.S1_a_at--924--231Chr03:26357420..26357444 (25 bp)
ATATAATTCGTTTTCTTCTGCAGCT
LOC_Os03g46660
Os.21574.1.S1_a_at--674--9571Chr03:26357407..26357431 (25 bp)
TCTTCTGCAGCTATCACCATATATG
LOC_Os03g46660
Os.21574.1.S1_a_at--509--7391Chr03:26357275..26357299 (25 bp)
GTGAGGATGCATATCGTCCTGTCTC
LOC_Os03g46660
Os.21574.1.S1_a_at--152--10571Chr03:26357246..26357270 (25 bp)
TTCTTCTCGGCGTAGCAGATGCTTC
LOC_Os03g46660
Os.21574.1.S1_a_at--638--191Chr03:26357220..26357244 (25 bp)
ATTTCCTCGGTTTGCCTTTGTGGCT
LOC_Os03g46660
Os.21574.1.S1_a_at--45--4671Chr03:26357178..26357202 (25 bp)
GCGTGTGTGTGACTAACTGTGCATA
LOC_Os03g46660
Os.21574.1.S1_a_at--370--2571Chr03:26357164..26357188 (25 bp)
AACTGTGCATATGGCGTCTCTTCTA
LOC_Os03g46660
Os.21574.1.S1_a_at--166--9571Chr03:26357146..26357170 (25 bp)
TCTTCTAGTGCAGCTTTGGGCAGGT
LOC_Os03g46660
Os.21574.1.S1_a_at--765--10031Chr03:26357102..26357126 (25 bp)
TAGAGGCGTGTGAGTCGTTGTCAAT
LOC_Os03g46660
Os.21574.1.S1_a_at--1075--3512Chr06:1107449..1107471 (22 bp)
CATGTTGTCATGCTTGTCTGGAATA
NONE
Target Sequence 
TATTAACCATTTTATCCTCCACACAGCTCCAGTCCATGGCCCATATATAATTCGTTTTCTTCTGCAGCTATCACCATATA
TGATGATCTACTATACAAGTTTTCCGGCCCTACAAACGCCTGCGCGAATCGAATAAAGCCACGGACAATAATGTAACGTT
TTATGGTGGCGGTGGTTGGCTGGCTCACTGTGAGGATGCATATCGTCCTGTCTCCGTCTTCTTCTCGGCGTAGCAGATGC
TTCCATTTCCTCGGTTTGCCTTTGTGGCTTTTGTGCCTTTGTGCGTGCGTGTGTGTGACTAACTGTGCATATGGCGTCTC
TTCTAGTGCAGCTTTGGGCAGGTTGGCTTTGTGATGACTGTGTAGAGGCGTGTGAGTCGTTGTCAATGGTGATACAGGTT
GTTTGGTGTGTAATCTACCTATGCTTATATGTATATGCCTATATTTATAGTCGATTATGTTGCATTATTTGTANNNGCAT
GTTGTCATGCTTGTCTGGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21574.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis