Browse Element(s) Details


Os.5421.1.S1_s_at

Description gb:AK067769.1
DB_XREF= gi:32977787
TID=Os.5421.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013120J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120J20, full insert sequence.
FL= gb:AK067769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4661011/11ATP-dependent RNA helicase DDX47, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46570OsAffx.25581.1.S1_at11/113+26312309..26313412expressed protein
LOC_Os03g46570Os.49537.1.S1_x_at5/113+26312309..26313412expressed protein
LOC_Os03g46570Os.20627.3.S1_x_at1/113+26312309..26313412expressed protein
LOC_Os03g46590Os.14919.1.S1_at3/113+26320324..26324849transposon protein, putative, Mutator sub-class
LOC_Os03g46590OsAffx.29313.1.S1_at1/113+26320324..26324849transposon protein, putative, Mutator sub-class
LOC_Os03g46590Os.56216.1.S1_at1/113+26320324..26324849transposon protein, putative, Mutator sub-class
LOC_Os03g46600Os.55587.1.S1_at11/113+26326865..26329081Leucine Rich Repeat family protein, expressed
LOC_Os03g46610Os.53765.1.S1_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46610Os.5421.1.S1_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46610Os.5421.1.S1_s_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46620Os.38764.1.S1_x_at5/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46620Os.10731.1.A1_a_at2/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46620Os.45173.1.S1_x_at2/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46630NANA3+26341863..26343734retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46640Os.8039.1.S1_at11/113+26345472..26346656Deoxyuridine 5'-triphosphate nucleotidohydrolase, putative, expressed
LOC_Os03g46650Os.10.1.S1_s_at11/113+26347808..26355758Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os03g46650OsAffx.25583.1.S1_at11/113+26347808..26355758Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os03g46660Os.21574.1.S1_a_at11/113+26356927..26359742Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5421.1.S1_s_at--542--2151Chr03:26330791..26330815 (25 bp)
ACAGCACGTGCAGGGAATACAGGAT
LOC_Os03g46610
Os.5421.1.S1_s_at--1079--5391Chr03:26330614..26330738 (25 bp)
GAAGCTCCTTGGATACGAGATTCCT
LOC_Os03g46610
Os.5421.1.S1_s_at--234--2051Chr03:26330557..26330581 (25 bp)
ACTTCGTGAACGTATCTCTGACTCG
LOC_Os03g46610
Os.5421.1.S1_s_at--1121--8931Chr03:26330539..26330563 (25 bp)
TGACTCGAAGAGGATTGCGCTGACG
LOC_Os03g46610
Os.5421.1.S1_s_at--259--8091Chr03:26330226..26330250 (25 bp)
GGAGCGCAATGCTCCTGTTTCCAGA
LOC_Os03g46610
Os.5421.1.S1_s_at--925--10051Chr03:26330118..26330142 (25 bp)
TAGTATTATACTGGCATACCACCGC
LOC_Os03g46610
Os.5421.1.S1_s_at--516--311Chr03:26330103..26330127 (25 bp)
ATACCACCGCCACAATTTTATGTAA
LOC_Os03g46610
Os.5421.1.S1_s_at--905--731Chr03:26330058..26330082 (25 bp)
ATGTAGGTCCATTTCGACGAATTAG
LOC_Os03g46610
Os.5421.1.S1_s_at--1109--4711Chr03:26330014..26330038 (25 bp)
GCTGGATCTTGGAAAATTTGCTCAT
LOC_Os03g46610
Os.5421.1.S1_s_at--580--10271Chr03:26329998..26330022 (25 bp)
TTTGCTCATCTGTTGCTACAAAAGC
LOC_Os03g46610
Os.5421.1.S1_s_at--170--10111Chr03:26329970..26329994 (25 bp)
TATGGAAAATTTGCTCATCTGCTTC
LOC_Os03g46610
Target Sequence 
ACAGCACGTGCAGGGAATACAGGATATNCTGTATCTTTNGGTGAATCNATACNGAGNCCATGTGGTTTAAGATGATAGAG
AAGCTCCTTGGATACGAGATTCCTGATCGTAAGGTGGATAACGCAGAAATCATGATACTTCGTGAACGTATCTCTGACTC
GAAGAGGATTGCGCTGACGACGATGAAGGAGGGCGGTGGCCACAAGAAAAAGCGGAGGAAGAACGAAGATGATGAGGAAG
AGGAGGAGCGCAATGCTCCTGTTTCCAGAAAATCGAAGTCCTTCAACAAATCAAGAAGACGGTGAAAGCATTGGAGCAAG
TGATCGTGAGGCGAGCTTGGGATGAGTTAGATTAGTATTATACTGGCATACCACCGCCACAATTTTATGTAACCATTCAA
GAATAGATATTTATGTAGGTCCATTTCGACGAATTAGCTATTTTATTATTTGTGAAGCTGGATCTTGGAAAATTTGCTCA
TCTGTTGCTACAAAAGCATATATGGAAAATTTGCTCATCTGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5421.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis