Browse Element(s) Details


OsAffx.25581.1.S1_at

Description tigr:9631.m04521
TID=OsAffx.25581.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4657011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46550Os.51185.2.S1_x_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46550OsAffx.25580.1.S1_x_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46550Os.51185.2.S1_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46560OsAffx.4205.2.A1_at2/113+26292666..26295522membrane associated salt-inducible protein, putative
LOC_Os03g46570OsAffx.25581.1.S1_at11/113+26312309..26313412expressed protein
LOC_Os03g46570Os.49537.1.S1_x_at5/113+26312309..26313412expressed protein
LOC_Os03g46570Os.20627.3.S1_x_at1/113+26312309..26313412expressed protein
LOC_Os03g46590Os.14919.1.S1_at3/113+26320324..26324849transposon protein, putative, Mutator sub-class
LOC_Os03g46590OsAffx.29313.1.S1_at1/113+26320324..26324849transposon protein, putative, Mutator sub-class
LOC_Os03g46590Os.56216.1.S1_at1/113+26320324..26324849transposon protein, putative, Mutator sub-class
LOC_Os03g46600Os.55587.1.S1_at11/113+26326865..26329081Leucine Rich Repeat family protein, expressed
LOC_Os03g46610Os.53765.1.S1_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46610Os.5421.1.S1_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46610Os.5421.1.S1_s_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46620Os.38764.1.S1_x_at5/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46620Os.10731.1.A1_a_at2/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46620Os.45173.1.S1_x_at2/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25581.1.S1_at--1127--9411Chr03:26312792..26312898 (25 bp)
TCGTGCTCCACCATGCGGCGAAGAT
LOC_Os03g46570
OsAffx.25581.1.S1_at--739--7311Chr03:26312794..26312900 (25 bp)
GTGCTCCACCATGCGGCGAAGATGT
LOC_Os03g46570
OsAffx.25581.1.S1_at--848--1291Chr03:26312895..26312919 (25 bp)
AGATGTGGGCGGAGCTTGCGGAGCA
LOC_Os03g46570
OsAffx.25581.1.S1_at--783--1831Chr03:26312931..26312955 (25 bp)
ACGCGAGGCAGATGGTGGCCACCGT
LOC_Os03g46570
OsAffx.25581.1.S1_at--180--1291Chr03:26312997..26313021 (25 bp)
AGATCGAGCGGATCGGTCGCCTCAA
LOC_Os03g46570
OsAffx.25581.1.S1_at--100--4091Chr03:26313001..26313025 (25 bp)
CGAGCGGATCGGTCGCCTCAACTGG
LOC_Os03g46570
OsAffx.25581.1.S1_at--543--9331Chr03:26313013..26313037 (25 bp)
TCGCCTCAACTGGGCGCTCGAGGAG
LOC_Os03g46570
OsAffx.25581.1.S1_at--190--9731Chr03:26313042..26313066 (25 bp)
TCAAGGGCATGTACGTCGAGGCGCA
LOC_Os03g46570
OsAffx.25581.1.S1_at--751--6212Chr05:17864927..17865171 (25 bp)
GAGGCGCAGGTGTGGCGCGACCTCG
NONE
OsAffx.25581.1.S1_at--924--7251Chr03:26313190..26313214 (25 bp)
GTCCTGCTGCTACGGCGAGAACGAC
LOC_Os03g46570
OsAffx.25581.1.S1_at--711--4751Chr03:26313195..26313219 (25 bp)
GCTGCTACGGCGAGAACGACGTGCT
LOC_Os03g46570
Target Sequence 
TCGTGCTCCACCATGCGGCGAAGATGTGGGCGGAGCTTGCGGAGCAGAGGGGGAGGCACGCGAGGCAGATGGTGGCCACC
GTGGAGGCCGCGGCGGCGAGGCGGCTGAGGGCCAAGGACGAGGAGATCGAGCGGATCGGTCGCCTCAACTGGGCGCTCGA
GGAGCGCCTCAAGGGCATGTACGTCGAGGCGCAGGTGTGGCGCGACCTCGCGCAGTCCAACGAGGCCACCGCCAACGCCC
TCCGCGGCGAGCTCGAGCACGTCCTCGACGCCCACGCGCGCCGCGGCGCCGACCACGGCGACGGCGACGACGCCGAGTCC
TGCTGCTACGGCGAGAACGACGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis