Browse Element(s) Details


Os.51185.2.S1_x_at

Description gb:AK061413.1
DB_XREF= gi:32971431
TID=Os.51185.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-306-C12, full insert sequence.
FL= gb:AK061413.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4655011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46500OsAffx.25578.1.S1_at11/113+26263008..26264615F-box domain containing protein
LOC_Os03g46510Os.24829.1.A1_at11/113+26266239..26268653F-box domain containing protein, expressed
LOC_Os03g46510Os.24829.2.S1_x_at11/113+26266239..26268653F-box domain containing protein, expressed
LOC_Os03g46530OsAffx.25579.3.S1_at11/113+26273924..26276706F-box domain containing protein
LOC_Os03g46530Os.24829.2.S1_x_at2/113+26273924..26276706F-box domain containing protein
LOC_Os03g46540OsAffx.3533.1.S1_at11/113+26278837..26282292hypothetical protein
LOC_Os03g46550Os.51185.2.S1_x_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46550OsAffx.25580.1.S1_x_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46550Os.51185.2.S1_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46560OsAffx.4205.2.A1_at2/113+26292666..26295522membrane associated salt-inducible protein, putative
LOC_Os03g46570OsAffx.25581.1.S1_at11/113+26312309..26313412expressed protein
LOC_Os03g46570Os.49537.1.S1_x_at5/113+26312309..26313412expressed protein
LOC_Os03g46570Os.20627.3.S1_x_at1/113+26312309..26313412expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51185.2.S1_x_at--718--5391Chr03:26290554..26290578 (25 bp)
GAAGCAGTCCAGATTTCAAACTTGA
LOC_Os03g46550
Os.51185.2.S1_x_at--886--131Chr03:26290580..26290604 (25 bp)
ATTAAAGCTGCGATGTTCCTCGCTC
LOC_Os03g46550
Os.51185.2.S1_x_at--299--10671Chr03:26290595..26290619 (25 bp)
TTCCTCGCTCCTAAGTCGTAATACA
LOC_Os03g46550
Os.51185.2.S1_x_at--614--7851Chr03:26290650..26290674 (25 bp)
GGTAGTTCCTTGCAGTGCTCAACAT
LOC_Os03g46550
Os.51185.2.S1_x_at--419--3591Chr03:26290672..26290696 (25 bp)
CATTTTTAGGTTTGTGCTCTGCTCT
LOC_Os03g46550
Os.51185.2.S1_x_at--627--8691Chr03:26290684..26290708 (25 bp)
TGTGCTCTGCTCTTCTATAAATGTG
LOC_Os03g46550
Os.51185.2.S1_x_at--778--51Chr03:26290977..26291001 (25 bp)
ATTGTTGTGTGCTTATATTGAGTCA
LOC_Os03g46550
Os.51185.2.S1_x_at--359--3672Chr03:26291014..26291038 (25 bp)
CTTATGCTCGGATATATTTTCTTGG
LOC_Os03g46550
Os.51185.2.S1_x_at--319--10531Chr03:26291032..26291056 (25 bp)
TTCTTGGTTGATTCACGTGTCGGTG
LOC_Os03g46550
Os.51185.2.S1_x_at--338--1911Chr03:26291046..26291070 (25 bp)
ACGTGTCGGTGAGTCATGATACCTT
LOC_Os03g46550
Os.51185.2.S1_x_at--1151--6471Chr03:26291063..26291087 (25 bp)
GATACCTTGGAAGAGTGTTGCCGAT
LOC_Os03g46550
Target Sequence 
GAAGCAGTCCAGATTTCAAACTTGAAATTAAAGCTGCGATGTTCCTCGCTCCTAAGTCGTAATACACCAACGGACAGTTT
GTAGGTTGTTTTTCCGGGTAGTTCCTTGCAGTGCTCAACATTTTTAGGTTTGTGCTCTGCTCTTCTATAAATGTGAAATC
ANAGTGTGTTTTGATTATTATTTCACGATGAACAATTGGTATTTGAGATAATTGTTTTAATTTTCCGAGGGAACAAATAA
TTGGTTTTAATATTTGGACATAATTGGCGAAGTGGGTTGCTGACTCTGTGACCCATCAGACCGGTGTATGTTGTGCGGTC
TGANCAGCCGGCTCTTNGTCGGTTTCGGTTTCGGGTTGTTCATTTGNATACTTGTGATTAATTCATGTTTATAACTTATA
GATGGATACTATGCGTATGTAATATTGTTGTGTGCTTATATTGAGTCAAGTTGGAGAGAACTTATGCTCGGATATATTTT
CTTGGTTGATTCACGTGTCGGTGAGTCATGATACCTTGGAAGAGTGTTGCCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51185.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis