Browse Element(s) Details


OsAffx.3533.1.S1_at

Description tigr:9631.m04518
TID=OsAffx.3533.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4654011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46490OsAffx.25577.1.S1_at11/113+26257756..2625889240S ribosomal protein S21, putative, expressed
LOC_Os03g46490Os.57468.1.S1_x_at1/113+26257756..2625889240S ribosomal protein S21, putative, expressed
LOC_Os03g46500OsAffx.25578.1.S1_at11/113+26263008..26264615F-box domain containing protein
LOC_Os03g46510Os.24829.1.A1_at11/113+26266239..26268653F-box domain containing protein, expressed
LOC_Os03g46510Os.24829.2.S1_x_at11/113+26266239..26268653F-box domain containing protein, expressed
LOC_Os03g46530OsAffx.25579.3.S1_at11/113+26273924..26276706F-box domain containing protein
LOC_Os03g46530Os.24829.2.S1_x_at2/113+26273924..26276706F-box domain containing protein
LOC_Os03g46540OsAffx.3533.1.S1_at11/113+26278837..26282292hypothetical protein
LOC_Os03g46550Os.51185.2.S1_x_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46550OsAffx.25580.1.S1_x_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46550Os.51185.2.S1_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46560OsAffx.4205.2.A1_at2/113+26292666..26295522membrane associated salt-inducible protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3533.1.S1_at--265--4691Chr03:26282203..26282227 (25 bp)
GCGGCTTGGCACTTTACTGGAGTAC
LOC_Os03g46540
OsAffx.3533.1.S1_at--335--1071Chr03:26280473..26280495 (23 bp)
AGGGAGCCCCTAAGCCGGTGGATAT
LOC_Os03g46540
OsAffx.3533.1.S1_at--1102--1671Chr03:26280461..26280485 (25 bp)
AGCCGGTGGATATCGAGCACTCGCT
LOC_Os03g46540
OsAffx.3533.1.S1_at--1162--1931Chr03:26279434..26279458 (25 bp)
ACTGGATACATGTGGTTGTCGTGCC
LOC_Os03g46540
OsAffx.3533.1.S1_at--666--2471Chr03:26279386..26279410 (25 bp)
AACACTACTCGTGGCGGCATTGCCG
LOC_Os03g46540
OsAffx.3533.1.S1_at--265--4771Chr03:26279362..26279386 (25 bp)
GCTGCCGCTGATACAGTCATAACCA
LOC_Os03g46540
OsAffx.3533.1.S1_at--671--1451Chr03:26278979..26279328 (25 bp)
AGAAGTTAGGCCATCACGCGGCCAG
LOC_Os03g46540
OsAffx.3533.1.S1_at--1062--2431Chr03:26278951..26278975 (25 bp)
AAAAGGGCCATGCTGGCGATGCCAC
LOC_Os03g46540
OsAffx.3533.1.S1_at--373--2091Chr03:26278928..26278952 (25 bp)
ACATGACCTGCCTCATTGTGACGTT
LOC_Os03g46540
OsAffx.3533.1.S1_at--1079--31Chr03:26278914..26278938 (25 bp)
ATTGTGACGTTCATTGCCACTGCTG
LOC_Os03g46540
OsAffx.3533.1.S1_at--766--8271Chr03:26278875..26278899 (25 bp)
GGCATGATCGCCATAGTCGAGGAGA
LOC_Os03g46540
Target Sequence 
GCGGCTTGGCACTTTACTGGAGTACTGGCTATGGAGGAAGCGGTCTGAGTATGTGGAGAGTGGCTGCAGCGTGCAGGAGG
GAGCCCCTAAGCCGGTGGATATCGAGCACTCGCTGGGGAACAAGGAGATCGTACGTCTCCTCAACTCCACTGTTGTCAAG
GATACTGGATACATGTGGTTGTCGTGCCACACCTGCCGTCACGACCTCGCCAACACTACTCGTGGCGGCATTGCCGCTGC
CGCTGATACAGTCATAACCATTGAGGAGAAACGGGGAGAGGAGTGGTGTAGGAAGAAGTTAGGCCATCACGCGGCCAGCC
CAAAAGGGCCATGCTGGCGATGCCACATGACCTGCCTCATTGTGACGTTCATTGCCACTGCTGGCACCGGTGACCGGGGC
ATGATCGCCATAGTCGAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis