Browse Element(s) Details


Os.24829.2.S1_x_at

Description gb:AK111783.1
DB_XREF= gi:37988446
TID=Os.24829.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087J12, full insert sequence.
FL= gb:AK111783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4651011/11F-box domain containing protein, expressed
LOC_Os03g465302/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46480Os.26875.1.S1_at9/113+26242375..26247663RanBP1 domain containing protein, expressed
LOC_Os03g46480OsAffx.5832.1.S1_at1/113+26242375..26247663RanBP1 domain containing protein, expressed
LOC_Os03g46490OsAffx.25577.1.S1_at11/113+26257756..2625889240S ribosomal protein S21, putative, expressed
LOC_Os03g46490Os.57468.1.S1_x_at1/113+26257756..2625889240S ribosomal protein S21, putative, expressed
LOC_Os03g46500OsAffx.25578.1.S1_at11/113+26263008..26264615F-box domain containing protein
LOC_Os03g46510Os.24829.1.A1_at11/113+26266239..26268653F-box domain containing protein, expressed
LOC_Os03g46510Os.24829.2.S1_x_at11/113+26266239..26268653F-box domain containing protein, expressed
LOC_Os03g46530OsAffx.25579.3.S1_at11/113+26273924..26276706F-box domain containing protein
LOC_Os03g46530Os.24829.2.S1_x_at2/113+26273924..26276706F-box domain containing protein
LOC_Os03g46540OsAffx.3533.1.S1_at11/113+26278837..26282292hypothetical protein
LOC_Os03g46550Os.51185.2.S1_x_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46550OsAffx.25580.1.S1_x_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46550Os.51185.2.S1_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46560OsAffx.4205.2.A1_at2/113+26292666..26295522membrane associated salt-inducible protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24829.2.S1_x_at--88--7651Chr03:26267528..26267552 (25 bp)
GGGAGCTCAAGCATGACAAGCACAT
LOC_Os03g46510
Os.24829.2.S1_x_at--497--3411Chr03:26267553..26267577 (25 bp)
CAGACATATTCTGCTTGGGCGCAAT
LOC_Os03g46510
Os.24829.2.S1_x_at--659--8651Chr03:26267568..26267592 (25 bp)
TGGGCGCAATAATCGACAAGGTCTC
LOC_Os03g46510
Os.24829.2.S1_x_at--826--2891Chr03:26267585..26267609 (25 bp)
AAGGTCTCGGCCCATGGATTTTACA
LOC_Os03g46510
Os.24829.2.S1_x_at--87--7932Chr03:26267600..26267624 (25 bp)
GGATTTTACAGGATATCAACCACCA
LOC_Os03g46510
Os.24829.2.S1_x_at--426--5591Chr03:26267653..26267677 (25 bp)
GAAATCATTGAAGCACCCAACCAGA
LOC_Os03g46510
Os.24829.2.S1_x_at--426--1331Chr03:26267845..26267869 (25 bp)
AGAGGGCTAGCCTATCATTTAAGCA
LOC_Os03g46510
Os.24829.2.S1_x_at--514--7831Chr03:26267890..26267914 (25 bp)
GGTAACTTATATCCAACCAACCTTG
LOC_Os03g46510
Os.24829.2.S1_x_at--520--6812Chr03:26267937..26267961 (25 bp)
GTTTATAACCGCTTCTTTTCCATAT
LOC_Os03g46510
Os.24829.2.S1_x_at--1143--3551Chr03:26267957..26267981 (25 bp)
CATATACACCCTGCTTCATGTGAGG
LOC_Os03g46510
Os.24829.2.S1_x_at--293--1011Chr03:26268047..26268071 (25 bp)
AGGATTTGCTCCTCTTTATTAAGAG
LOC_Os03g46510
Target Sequence 
GGGAGCTCAAGCATGACAAGCACATCAGACATATTCTGCTTGGGCGCAATAATCGACAAGGTCTCGGCCCATGGATTTTA
CAGGATATCAACCACCAAAAGAATCCTTATATATATGAATATGATGAAATCATTGAAGCACCCAACCAGAAGAAGGTTGA
ATGTGAACAAGCAGCATTGGAGAAGTTTGAATGGATCTCAGACGATGAAAATGTTCTTGACAATGAAGATATAGTTACAG
GAGGATATCATGAATACATTAATATCATTGGGTTTCATCCATACAAAGAGATAATATTTTTAGACGAATCGTTAAAGAGA
GGGCTAGCCTATCATTTAAGCAGCTCAAAGGTTGAAGATATAGGTAACTTATATCCAACCAACCTTGAATATGAATTAAT
TAATGAGCAGTTTATAACCGCTTCTTTTCCATATACACCCTGCTTCATGTGAGGGTTTCTAGAGAAGCTTAAACATCGAA
ATAAATGACTGTACTCATGTATTCAAATATGTACCTATGAGGATTTGCTCCTCTTTATTAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24829.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis