Browse Element(s) Details


OsAffx.25578.1.S1_at

Description tigr:9631.m04515
TID=OsAffx.25578.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4650011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46470Os.19632.1.S1_at11/113+26235422..26241186ZIP zinc/iron transport family protein, expressed
LOC_Os03g46480Os.26875.1.S1_at9/113+26242375..26247663RanBP1 domain containing protein, expressed
LOC_Os03g46480OsAffx.5832.1.S1_at1/113+26242375..26247663RanBP1 domain containing protein, expressed
LOC_Os03g46490OsAffx.25577.1.S1_at11/113+26257756..2625889240S ribosomal protein S21, putative, expressed
LOC_Os03g46490Os.57468.1.S1_x_at1/113+26257756..2625889240S ribosomal protein S21, putative, expressed
LOC_Os03g46500OsAffx.25578.1.S1_at11/113+26263008..26264615F-box domain containing protein
LOC_Os03g46510Os.24829.1.A1_at11/113+26266239..26268653F-box domain containing protein, expressed
LOC_Os03g46510Os.24829.2.S1_x_at11/113+26266239..26268653F-box domain containing protein, expressed
LOC_Os03g46530OsAffx.25579.3.S1_at11/113+26273924..26276706F-box domain containing protein
LOC_Os03g46530Os.24829.2.S1_x_at2/113+26273924..26276706F-box domain containing protein
LOC_Os03g46540OsAffx.3533.1.S1_at11/113+26278837..26282292hypothetical protein
LOC_Os03g46550Os.51185.2.S1_x_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46550OsAffx.25580.1.S1_x_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46550Os.51185.2.S1_at11/113+26286909..26291150NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25578.1.S1_at--1074--4391Chr03:26264033..26264057 (25 bp)
GCCAAAGGTTACTAGGATGCCCTCA
LOC_Os03g46500
OsAffx.25578.1.S1_at--25--7991Chr03:26264047..26264071 (25 bp)
GGATGCCCTCAGAAGACTCTTATTT
LOC_Os03g46500
OsAffx.25578.1.S1_at--687--8031Chr03:26264094..26264118 (25 bp)
GGAGTGTACCTTGCATTAGCCAGAC
LOC_Os03g46500
OsAffx.25578.1.S1_at--565--1411Chr03:26264115..26264139 (25 bp)
AGACATTGCTGCCATCTTCTAGTTT
LOC_Os03g46500
OsAffx.25578.1.S1_at--845--4431Chr03:26264125..26264149 (25 bp)
GCCATCTTCTAGTTTGGATTCTGGA
LOC_Os03g46500
OsAffx.25578.1.S1_at--1101--8631Chr03:26264233..26264257 (25 bp)
TGGGACCATGGATCTTACAGGAAAT
LOC_Os03g46500
OsAffx.25578.1.S1_at--989--8911Chr03:26264321..26264345 (25 bp)
TGAGCTCAACGAGGAAGCCACATTG
LOC_Os03g46500
OsAffx.25578.1.S1_at--607--6291Chr03:26264370..26264394 (25 bp)
GATGATAATGCTCCTTGCAATGAAG
LOC_Os03g46500
OsAffx.25578.1.S1_at--1050--3591Chr03:26264429..26264453 (25 bp)
CATTGGATTCCACCCTTTCAAAGAG
LOC_Os03g46500
OsAffx.25578.1.S1_at--504--6251Chr03:26264520..26264544 (25 bp)
GATCTAGGTGACTTATACCCAGTAG
LOC_Os03g46500
OsAffx.25578.1.S1_at--119--7891Chr03:26264544..26264568 (25 bp)
GGTTACGATTTTGTACCATCCAATG
LOC_Os03g46500
Target Sequence 
GCCAAAGGTTACTAGGATGCCCTCAGAAGACTCTTATTTTTGTCTTGGAAGATCACAAAAAGGAGTGTACCTTGCATTAG
CCAGACATTGCTGCCATCTTCTAGTTTGGATTCTGGATGAATCATGTGACGGAATAAAGTGGGAGTTAAAGCATGATAAA
GACATTAAACATATTCTACTTGGACGAAATAAAGTAGATCTGGGACCATGGATCTTACAGGAAATTAATTATCAAAAAGA
AGAAGGTAGCTTATCATCATATGAATGGTTTCGAAAGAAGCTTGAATATGAGCTCAACGAGGAAGCCACATTGGAGAAGT
CTGAATGGAACTCTGATGATGATAATGCTCCTTGCAATGAAGATATTATAGGAAGATACAATGAAGCTATTGATATCATT
GGATTCCACCCTTTCAAAGAGATTATATTCTTCAGTGAATCGTTCGAGAGAGGGATAGCCTATCATTTAAATGGCTCAAA
GGTTGAAGATCTAGGTGACTTATACCCAGTAGGTTACGATTTTGTACCATCCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis