Browse Element(s) Details


Os.26875.1.S1_at

Description gb:CB623639
DB_XREF= gi:29618627
DB_XREF=OSIIEa11I15.r
CLONE=OSIIEa11I15
TID=Os.26875.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26875 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567381.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g464809/11RanBP1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46440Os.11575.2.S1_a_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.4.S1_x_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.1.S1_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.3.S1_x_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.1.S1_a_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46450OsAffx.30226.2.S1_s_at10/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.442.1.S1_x_at7/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.30226.1.S1_x_at5/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.30226.2.S1_x_at4/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.30226.1.S1_at2/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.19052.1.S1_at1/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.442.1.S1_at1/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46454OsAffx.10755.1.S1_at11/113+26230441..26231345ZIP zinc/iron transport family protein, expressed
LOC_Os03g46460Os.16517.1.S1_at11/113+26232282..26236343membrane associated salt-inducible protein, putative, expressed
LOC_Os03g46470Os.19632.1.S1_at11/113+26235422..26241186ZIP zinc/iron transport family protein, expressed
LOC_Os03g46480Os.26875.1.S1_at9/113+26242375..26247663RanBP1 domain containing protein, expressed
LOC_Os03g46480OsAffx.5832.1.S1_at1/113+26242375..26247663RanBP1 domain containing protein, expressed
LOC_Os03g46490OsAffx.25577.1.S1_at11/113+26257756..2625889240S ribosomal protein S21, putative, expressed
LOC_Os03g46490Os.57468.1.S1_x_at1/113+26257756..2625889240S ribosomal protein S21, putative, expressed
LOC_Os03g46500OsAffx.25578.1.S1_at11/113+26263008..26264615F-box domain containing protein
LOC_Os03g46510Os.24829.1.A1_at11/113+26266239..26268653F-box domain containing protein, expressed
LOC_Os03g46510Os.24829.2.S1_x_at11/113+26266239..26268653F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26875.1.S1_at--246--1511Chr03:26243455..26243479 (25 bp)
AGCACGGTTGCTTCGATATTCCATA
LOC_Os03g46480
Os.26875.1.S1_at--142--5931Chr03:26242742..26242766 (25 bp)
GGGACACTTGTAGCCAACTTAAACT
LOC_Os03g46480
Os.26875.1.S1_at--961--1291Chr03:26242704..26242728 (25 bp)
AGATGCCTTGCACAGTTTTTTGCCC
LOC_Os03g46480
Os.26875.1.S1_at--920--2411Chr03:26242648..26242672 (25 bp)
AAAAAATCCGTGTTGCTCTTGCTCG
LOC_Os03g46480
Os.26875.1.S1_at--554--4711Chr03:26242620..26242644 (25 bp)
GCTGGCCAGCCATGTACTATTATTT
LOC_Os03g46480
Os.26875.1.S1_at--1046--9451Chr03:26242594..26242618 (25 bp)
TCGGCCATGTAGTAAGGTCACCTTT
LOC_Os03g46480
Os.26875.1.S1_at--114--1031Chr03:26242580..26242604 (25 bp)
AGGTCACCTTTAGTTATGGCACAAA
LOC_Os03g46480
Os.26875.1.S1_at--1075--10051NONE
TAGTCTTCAGACTTGGTGCAATCGA
NONE
Os.26875.1.S1_at--693--771NONE
ATGTGCAAACACATTCTCCGGTGTA
NONE
Os.26875.1.S1_at--900--2391Chr03:26242460..26242484 (25 bp)
AAACATCGCCGTATGCCGTTAAATT
LOC_Os03g46480
Os.26875.1.S1_at--1076--3671Chr03:26242410..26242434 (25 bp)
CTATCTTTTGACTCTTCCTACAGGA
LOC_Os03g46480
Target Sequence 
AGCACGGTTGCTTCGATATTCCATACCTCAGATGGACAGCCAAGTGAATCTGGCAGTGCTACAGTTGTAGCTCGAACATA
CTTGATCAGGGTGAAAAATGATGAGGCGGCTGCAAAGTTGTCAGCAGCAATTATGGAGAATGCGCCATTGGAATGATTCT
TCTATGGGTTAAAGCACTTTAAACCGTGAGTAATGCAGTGCTNGGGGACACTTGTAGCCAACTTAAACTGCGGCGANCCA
AAAGATGCCTTGCACAGTTTTTTGCCCTCCCAATTGCAGAGCAAAGTGCACGGAGAAAAAAAAATCCGTGTTGCTCTTGC
TCGTGAGCTGGCCAGCCATGTACTATTATTTATCGGCCATGTAGTAAGGTCACCTTTAGTTATGGCACAAATCAGATGGT
TGAACACCTGGGGGCTGCTAGCCTTGCTAGTCTTCAGACTTGGTGCAATCGATGTGCTACTATGTGCAAACACATTCTCC
GGTGTAAAACATCGCCGTATGCCGTTAAATTTTTGTACCATTTGTTAAATTCATTTCTATCTTTTGACTCTTCCTACAGG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis