Browse Element(s) Details

OsAffx.10755.1.S1_at

Description

gb:AB126086.1
DB_XREF= gi:47169680
GEN=OsIRT2
TID=OsAffx.10755.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OsIRT2 mRNA for iron regulated transporter-like protein, complete cds.
PROD=iron regulated transporter-like protein
FL= gb:AB126086.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g46454	11/11	ZIP zinc/iron transport family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g46424	NA	NA	3	+	26205738..26205986	hypothetical protein
LOC_Os03g46430	OsAffx.20858.5.S1_x_at	11/11	3	+	26210649..26213430	hypothetical protein
LOC_Os03g46430	OsAffx.20858.1.S1_x_at	5/11	3	+	26210649..26213430	hypothetical protein
LOC_Os03g46430	OsAffx.20858.4.S1_x_at	3/11	3	+	26210649..26213430	hypothetical protein
LOC_Os03g46440	Os.11575.2.S1_a_at	11/11	3	+	26213876..26221395	BTB/POZ domain containing protein, expressed
LOC_Os03g46440	Os.11575.4.S1_x_at	11/11	3	+	26213876..26221395	BTB/POZ domain containing protein, expressed
LOC_Os03g46440	Os.11575.1.S1_at	11/11	3	+	26213876..26221395	BTB/POZ domain containing protein, expressed
LOC_Os03g46440	Os.11575.3.S1_x_at	11/11	3	+	26213876..26221395	BTB/POZ domain containing protein, expressed
LOC_Os03g46440	Os.11575.1.S1_a_at	11/11	3	+	26213876..26221395	BTB/POZ domain containing protein, expressed
LOC_Os03g46450	OsAffx.30226.2.S1_s_at	10/11	3	+	26226216..26230184	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450	OsAffx.442.1.S1_x_at	7/11	3	+	26226216..26230184	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450	OsAffx.30226.1.S1_x_at	5/11	3	+	26226216..26230184	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450	OsAffx.30226.2.S1_x_at	4/11	3	+	26226216..26230184	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450	OsAffx.30226.1.S1_at	2/11	3	+	26226216..26230184	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450	OsAffx.19052.1.S1_at	1/11	3	+	26226216..26230184	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450	OsAffx.442.1.S1_at	1/11	3	+	26226216..26230184	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46454	OsAffx.10755.1.S1_at	11/11	3	+	26230441..26231345	ZIP zinc/iron transport family protein, expressed
LOC_Os03g46460	Os.16517.1.S1_at	11/11	3	+	26232282..26236343	membrane associated salt-inducible protein, putative, expressed
LOC_Os03g46470	Os.19632.1.S1_at	11/11	3	+	26235422..26241186	ZIP zinc/iron transport family protein, expressed
LOC_Os03g46480	Os.26875.1.S1_at	9/11	3	+	26242375..26247663	RanBP1 domain containing protein, expressed
LOC_Os03g46480	OsAffx.5832.1.S1_at	1/11	3	+	26242375..26247663	RanBP1 domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006812	biological_process	cation transport
GO:0006826	biological_process	iron ion transport
GO:0006828	biological_process	manganese ion transport
GO:0006829	biological_process	zinc ion transport
GO:0006879	biological_process	iron ion homeostasis
GO:0015691	biological_process	cadmium ion transport
GO:0005381	molecular_function	iron ion transporter activity
GO:0005384	molecular_function	manganese ion transporter activity
GO:0005385	molecular_function	zinc ion transporter activity
GO:0008324	molecular_function	cation transporter activity
GO:0015086	molecular_function	cadmium ion transporter activity
GO:0046873	molecular_function	metal ion transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.10755.1.S1_at--340--825	1	Chr03:26231212..26231236 (25 bp)	GGCACTGTCACGCTCACGCGCTGGG	LOC_Os03g46454
OsAffx.10755.1.S1_at--762--783	1	Chr03:26231120..26231144 (25 bp)	GGTAACACCACCAAGGCGCAGCTTC	LOC_Os03g46454
OsAffx.10755.1.S1_at--485--295	1	Chr03:26231108..26231132 (25 bp)	AAGGCGCAGCTTCTCAGGAATCGCG	LOC_Os03g46454
OsAffx.10755.1.S1_at--22--507	1	Chr03:26231103..26231127 (25 bp)	GCAGCTTCTCAGGAATCGCGTCATT	LOC_Os03g46454
OsAffx.10755.1.S1_at--865--155	1	Chr03:26231101..26231125 (25 bp)	AGCTTCTCAGGAATCGCGTCATTGT	LOC_Os03g46454
OsAffx.10755.1.S1_at--531--365	1	Chr03:26231099..26231123 (25 bp)	CTTCTCAGGAATCGCGTCATTGTGC	LOC_Os03g46454
OsAffx.10755.1.S1_at--586--963	1	Chr03:26231095..26231119 (25 bp)	TCAGGAATCGCGTCATTGTGCAGGT	LOC_Os03g46454
OsAffx.10755.1.S1_at--419--821	1	Chr03:26231095..26231116 (22 bp)	GGAATCGCGTCATTGTGCAGGTTCT	LOC_Os03g46454
OsAffx.10755.1.S1_at--984--303	1	Chr03:26231010..26231114 (25 bp)	AATCGCGTCATTGTGCAGGTTCTCG	LOC_Os03g46454
OsAffx.10755.1.S1_at--229--415	1	Chr03:26231007..26231111 (25 bp)	CGCGTCATTGTGCAGGTTCTCGAGA	LOC_Os03g46454
OsAffx.10755.1.S1_at--156--403	1	Chr03:26231005..26231109 (25 bp)	CGTCATTGTGCAGGTTCTCGAGATG	LOC_Os03g46454

Target Sequence

GGCACTGTCACGCTCACGCGCTGGGGCAAGCAGACGTCGCTGCGCTGTCGACGACGGAGGCGGCGGATCAGGGCAGCGGC
GACGTCGAGGCCGGTAACACCACCAAGGCGCAGCTTCTCAGGAATCGCGTCATTGTGCAGGTTCTCGAGATG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis