Browse Element(s) Details


Os.16517.1.S1_at

Description gb:AK119409.1
DB_XREF= gi:37989032
TID=Os.16517.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-F05, full insert sequence.
FL= gb:AK119409.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4646011/11membrane associated salt-inducible protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46430OsAffx.20858.5.S1_x_at11/113+26210649..26213430hypothetical protein
LOC_Os03g46430OsAffx.20858.1.S1_x_at5/113+26210649..26213430hypothetical protein
LOC_Os03g46430OsAffx.20858.4.S1_x_at3/113+26210649..26213430hypothetical protein
LOC_Os03g46440Os.11575.2.S1_a_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.4.S1_x_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.1.S1_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.3.S1_x_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.1.S1_a_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46450OsAffx.30226.2.S1_s_at10/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.442.1.S1_x_at7/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.30226.1.S1_x_at5/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.30226.2.S1_x_at4/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.30226.1.S1_at2/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.19052.1.S1_at1/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.442.1.S1_at1/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46454OsAffx.10755.1.S1_at11/113+26230441..26231345ZIP zinc/iron transport family protein, expressed
LOC_Os03g46460Os.16517.1.S1_at11/113+26232282..26236343membrane associated salt-inducible protein, putative, expressed
LOC_Os03g46470Os.19632.1.S1_at11/113+26235422..26241186ZIP zinc/iron transport family protein, expressed
LOC_Os03g46480Os.26875.1.S1_at9/113+26242375..26247663RanBP1 domain containing protein, expressed
LOC_Os03g46480OsAffx.5832.1.S1_at1/113+26242375..26247663RanBP1 domain containing protein, expressed
LOC_Os03g46490OsAffx.25577.1.S1_at11/113+26257756..2625889240S ribosomal protein S21, putative, expressed
LOC_Os03g46490Os.57468.1.S1_x_at1/113+26257756..2625889240S ribosomal protein S21, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16517.1.S1_at--681--1711Chr03:26235771..26235795 (25 bp)
ACCAGCGCCATGTAGTGGAGCAGCC
LOC_Os03g46460
Os.16517.1.S1_at--355--8771Chr03:26235844..26235868 (25 bp)
TGTTGTCCCTGTACACCCTGGTCAG
LOC_Os03g46460
Os.16517.1.S1_at--816--3512Chr03:26235977..26236001 (25 bp)
CATCCCCTCGAACATCTGGTGGAAG
LOC_Os03g46460
Os.16517.1.S1_at--390--2512Chr03:26235987..26236011 (25 bp)
AACATCTGGTGGAAGCACATCGCCG
LOC_Os03g46460
Os.16517.1.S1_at--426--4491Chr03:26236021..26236045 (25 bp)
GCCGGATGGTGCACACGTTCTGCGA
LOC_Os03g46460
Os.16517.1.S1_at--473--1871Chr03:26236083..26236107 (25 bp)
ACGATGCCTATCTCGAGGACCTGCA
LOC_Os03g46460
Os.16517.1.S1_at--1129--8071Chr03:26236099..26236123 (25 bp)
GGACCTGCAGCATATGAAGCCGTGC
LOC_Os03g46460
Os.16517.1.S1_at--63--5431Chr03:26236114..26236138 (25 bp)
GAAGCCGTGCAAATCTGGTCAGTAT
LOC_Os03g46460
Os.16517.1.S1_at--537--7871Chr03:26236146..26236170 (25 bp)
GGTTTTTCGCTTTTAAGTTGCATAG
LOC_Os03g46460
Os.16517.1.S1_at--684--6911Chr03:26236173..26236197 (25 bp)
GTAGTTTGACCGACCATATTGTTTC
LOC_Os03g46460
Os.16517.1.S1_at--1050--1171Chr03:26236257..26236281 (25 bp)
AGTACTCGACAAGAAGCTGGCTGTA
LOC_Os03g46460
Target Sequence 
ACCAGCGCCATGTAGTGGAGCAGCCCCGCGGAGGCGGCGTTGAGGAGGCCGACGACGATGAGCGCCGTCGGGCTGTTGTC
CCTGTACACCCTGGTCAGGGCGAGGCCGAGGGCGATGCCGAACGGCGTCGTGGTGGAGAAGAAGAAGACGAGCACCGACC
TCATCCGGCGGCCGTACTCCGCCTGCAGGATGCAGCCGCCGAGGCCCATCCCCTCGAACATCTGGTGGAAGCACATCGCC
GCCACCAGCGGCCGGATGGTGCACACGTTCTGCGACGCCCCCATGCCGAGGCCGATCACCACCGAGTGCACCACGATGCC
TATCTCGAGGACCTGCAGCATATGAAGCCGTGCAAATCTGGTCAGTATATTTTTTGGTTTTTCGCTTTTAAGTTGCATAG
TTGTAGTTTGACCGACCATATTGTTTCAAAAGAATCTAATGACTAATTAGCCTCAAAGTTATCTTAATCGAGAGTACTTT
ACAACTAGTACTCGACAAGAAGCTGGCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis