Browse Element(s) Details


Os.19632.1.S1_at

Description gb:AB070226.1
DB_XREF= gi:18700308
GEN=OsIRT1
TID=Os.19632.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.19632 (NCBI UniGene Cluster)
DEF=Oryza sativa OsIRT1 mRNA for iron regulated metal transporter, complete cds.
PROD=iron regulated metal transporter
FL= gb:AB070226.1 gb:AK107681.1 gb:AY327039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4647011/11ZIP zinc/iron transport family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46430OsAffx.20858.5.S1_x_at11/113+26210649..26213430hypothetical protein
LOC_Os03g46430OsAffx.20858.1.S1_x_at5/113+26210649..26213430hypothetical protein
LOC_Os03g46430OsAffx.20858.4.S1_x_at3/113+26210649..26213430hypothetical protein
LOC_Os03g46440Os.11575.2.S1_a_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.4.S1_x_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.1.S1_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.3.S1_x_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.1.S1_a_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46450OsAffx.30226.2.S1_s_at10/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.442.1.S1_x_at7/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.30226.1.S1_x_at5/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.30226.2.S1_x_at4/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.30226.1.S1_at2/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.19052.1.S1_at1/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.442.1.S1_at1/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46454OsAffx.10755.1.S1_at11/113+26230441..26231345ZIP zinc/iron transport family protein, expressed
LOC_Os03g46460Os.16517.1.S1_at11/113+26232282..26236343membrane associated salt-inducible protein, putative, expressed
LOC_Os03g46470Os.19632.1.S1_at11/113+26235422..26241186ZIP zinc/iron transport family protein, expressed
LOC_Os03g46480Os.26875.1.S1_at9/113+26242375..26247663RanBP1 domain containing protein, expressed
LOC_Os03g46480OsAffx.5832.1.S1_at1/113+26242375..26247663RanBP1 domain containing protein, expressed
LOC_Os03g46490OsAffx.25577.1.S1_at11/113+26257756..2625889240S ribosomal protein S21, putative, expressed
LOC_Os03g46490Os.57468.1.S1_x_at1/113+26257756..2625889240S ribosomal protein S21, putative, expressed
LOC_Os03g46500OsAffx.25578.1.S1_at11/113+26263008..26264615F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0006826biological_processiron ion transport
GO:0006829biological_processzinc ion transport
GO:0010043biological_processresponse to zinc ion
GO:0005381molecular_functioniron ion transporter activity
GO:0005385molecular_functionzinc ion transporter activity
GO:0008324molecular_functioncation transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19632.1.S1_at--1112--8911Chr03:26235625..26235649 (25 bp)
TGAGCTGACGATGCATCACACTCTG
LOC_Os03g46470
Os.19632.1.S1_at--753--9131Chr03:26235602..26235626 (25 bp)
TGCGGCATCATGCAATTCGCTGCAT
LOC_Os03g46470
Os.19632.1.S1_at--170--3851Chr03:26235583..26235607 (25 bp)
CTGCATTGTTAGATTGAGCTTGGTC
LOC_Os03g46470
Os.19632.1.S1_at--91--5931Chr03:26235568..26235592 (25 bp)
GAGCTTGGTCAGACTCGATCATCAG
LOC_Os03g46470
Os.19632.1.S1_at--1085--391Chr03:26235548..26235572 (25 bp)
ATCAGCTGCAGACATGTTGTACAGT
LOC_Os03g46470
Os.19632.1.S1_at--154--7031Chr03:26235530..26235554 (25 bp)
GTACAGTGACTGTGACTTCTCCATG
LOC_Os03g46470
Os.19632.1.S1_at--292--7372Chr01:41324036..41324104 (24 bp)
GTGACTTCTCCATGTTGTACTGTAA
NONE
Os.19632.1.S1_at--267--131Chr03:26235495..26235519 (25 bp)
ATTCAGGTTTTCAGTGTTGTAGCGT
LOC_Os03g46470
Os.19632.1.S1_at--826--9991Chr03:26235476..26235500 (25 bp)
TAGCGTGGTTGTTCAGGTTTTGTTC
LOC_Os03g46470
Os.19632.1.S1_at--1053--1011Chr03:26235462..26235486 (25 bp)
AGGTTTTGTTCTTCGTGACTGATGA
LOC_Os03g46470
Os.19632.1.S1_at--978--7011Chr03:26235436..26235460 (25 bp)
GTACTTCAATACGAGCATCTACATA
LOC_Os03g46470
Target Sequence 
TGAGCTGACGATGCATCACACTCTGCGGCATCATGCAATTCGCTGCATTGTTAGATTGAGCTTGGTCAGACTCGATCATC
AGCTGCAGACATGTTGTACAGTGACTGTGACTTCTCCATGTTGTACTGTAATTCAGGTTTTCAGTGTTGTAGCGTGGTTG
TTCAGGTTTTGTTCTTCGTGACTGATGATGTACTTCAATACGAGCATCTACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis