Browse Element(s) Details

Os.24829.1.A1_at

Description

gb:AK111705.1
DB_XREF= gi:37988368
TID=Os.24829.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013A18, full insert sequence.
FL= gb:AK111705.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g46510	11/11	F-box domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g46480	Os.26875.1.S1_at	9/11	3	+	26242375..26247663	RanBP1 domain containing protein, expressed
LOC_Os03g46480	OsAffx.5832.1.S1_at	1/11	3	+	26242375..26247663	RanBP1 domain containing protein, expressed
LOC_Os03g46490	OsAffx.25577.1.S1_at	11/11	3	+	26257756..26258892	40S ribosomal protein S21, putative, expressed
LOC_Os03g46490	Os.57468.1.S1_x_at	1/11	3	+	26257756..26258892	40S ribosomal protein S21, putative, expressed
LOC_Os03g46500	OsAffx.25578.1.S1_at	11/11	3	+	26263008..26264615	F-box domain containing protein
LOC_Os03g46510	Os.24829.1.A1_at	11/11	3	+	26266239..26268653	F-box domain containing protein, expressed
LOC_Os03g46510	Os.24829.2.S1_x_at	11/11	3	+	26266239..26268653	F-box domain containing protein, expressed
LOC_Os03g46530	OsAffx.25579.3.S1_at	11/11	3	+	26273924..26276706	F-box domain containing protein
LOC_Os03g46530	Os.24829.2.S1_x_at	2/11	3	+	26273924..26276706	F-box domain containing protein
LOC_Os03g46540	OsAffx.3533.1.S1_at	11/11	3	+	26278837..26282292	hypothetical protein
LOC_Os03g46550	Os.51185.2.S1_x_at	11/11	3	+	26286909..26291150	NB-ARC domain containing protein, expressed
LOC_Os03g46550	OsAffx.25580.1.S1_x_at	11/11	3	+	26286909..26291150	NB-ARC domain containing protein, expressed
LOC_Os03g46550	Os.51185.2.S1_at	11/11	3	+	26286909..26291150	NB-ARC domain containing protein, expressed
LOC_Os03g46560	OsAffx.4205.2.A1_at	2/11	3	+	26292666..26295522	membrane associated salt-inducible protein, putative

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.24829.1.A1_at--915--1071	1	Chr03:26268103..26268127 (25 bp)	TTGCTTTCGGTGTGTGCTAGTTGTA	LOC_Os03g46510
Os.24829.1.A1_at--861--557	1	Chr03:26268140..26268164 (25 bp)	GAAAGGGTGCTCTAGTATCCATCCT	LOC_Os03g46510
Os.24829.1.A1_at--563--691	1	Chr03:26268154..26268178 (25 bp)	GTATCCATCCTATTAGCTACGTTGC	LOC_Os03g46510
Os.24829.1.A1_at--200--857	1	Chr03:26268191..26268215 (25 bp)	TGGTAATTTCTACTCGTACCTCTGC	LOC_Os03g46510
Os.24829.1.A1_at--637--377	1	Chr03:26268210..26268234 (25 bp)	CTCTGCTTGAATCTCTCTACTATTG	LOC_Os03g46510
Os.24829.1.A1_at--941--85	1	Chr03:26268239..26268263 (25 bp)	ATGGCATTACCAACTCTTGTCATAT	LOC_Os03g46510
Os.24829.1.A1_at--653--115	1	Chr03:26268305..26268329 (25 bp)	AGTCTTACCTTGCTACTATTGCAGA	LOC_Os03g46510
Os.24829.1.A1_at--1102--977	1	Chr03:26268394..26268418 (25 bp)	TAAGGGCTCCTTTGAAATTCATTAA	LOC_Os03g46510
Os.24829.1.A1_at--946--129	1	Chr03:26268485..26268509 (25 bp)	AGAGGTCCGAGTCTCTTCTGAATTC	LOC_Os03g46510
Os.24829.1.A1_at--959--223	1	Chr03:26268556..26268580 (25 bp)	AAATTCCCATGCATTACAGTAGGTG	LOC_Os03g46510
Os.24829.1.A1_at--201--879	1	Chr03:26268598..26268622 (25 bp)	TGTTGCCAAAACTTGTTCCTGGTAT	LOC_Os03g46510

Target Sequence

TTGCTTTCGGTGTGTGCTAGTTGTATTCTAAATCTTTGAAAGGGTGCTCTAGTATCCATCCTATTAGCTACGTTGCTATA
CATGCATATGGTAATTTCTACTCGTACCTCTGCTTGAATCTCTCTACTATTGATACATGGCATTACCAACTCTTGTCATA
TTGTGTATCTTTGATTAACATTGGCATGGATAAGGATAACTCAGTCTTACCTTGCTACTATTGCAGAAACACTGCAGCGT
AGAGAGCATGTCTGAATGAGTGAAGGGGAAAAAAAAGACGGTACAAGGAAATAAGGGCTCCTTTGAAATTCATTAATTTT
ATAATATTTGTACGTAAATTTGTTCGTTTTTTAGAAACTTCTTTGAAAATCCTTCAATCCAGAGAGGTCCGAGTCTCTTC
TGAATTCTGAAGGAAAGAAGCATCATGCTGCTCTTTTTTGTTAAGGACTACAAAAATTCCCATGCATTACAGTAGGTGAA
GGCTAAATGTATATTTGTTGCCAAAACTTGTTCCTGGTAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis