Browse Element(s) Details


Os.49537.1.S1_x_at

Description gb:AK064871.1
DB_XREF= gi:32974889
TID=Os.49537.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000J03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000J03, full insert sequence.
FL= gb:AK064871.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g465705/11expressed protein
LOC_Os08g313401/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46550Os.51185.2.S1_x_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46550OsAffx.25580.1.S1_x_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46550Os.51185.2.S1_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46560OsAffx.4205.2.A1_at2/113+26292666..26295522membrane associated salt-inducible protein, putative
LOC_Os03g46570OsAffx.25581.1.S1_at11/113+26312309..26313412expressed protein
LOC_Os03g46570Os.49537.1.S1_x_at5/113+26312309..26313412expressed protein
LOC_Os03g46570Os.20627.3.S1_x_at1/113+26312309..26313412expressed protein
LOC_Os03g46590Os.14919.1.S1_at3/113+26320324..26324849transposon protein, putative, Mutator sub-class
LOC_Os03g46590OsAffx.29313.1.S1_at1/113+26320324..26324849transposon protein, putative, Mutator sub-class
LOC_Os03g46590Os.56216.1.S1_at1/113+26320324..26324849transposon protein, putative, Mutator sub-class
LOC_Os03g46600Os.55587.1.S1_at11/113+26326865..26329081Leucine Rich Repeat family protein, expressed
LOC_Os03g46610Os.53765.1.S1_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46610Os.5421.1.S1_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46610Os.5421.1.S1_s_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46620Os.38764.1.S1_x_at5/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46620Os.10731.1.A1_a_at2/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46620Os.45173.1.S1_x_at2/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0030001biological_processmetal ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49537.1.S1_x_at--250--9271Chr03:26312323..26312347 (25 bp)
TCCTCCTTATATTAGGCGCGCACCG
LOC_Os03g46570
Os.49537.1.S1_x_at--438--231Chr03:26312331..26312355 (25 bp)
ATATTAGGCGCGCACCGCACGCGTG
LOC_Os03g46570
Os.49537.1.S1_x_at--176--731Chr03:26312431..26312455 (25 bp)
ATGTTCTCGCCGAGGCAGCCTTGTT
LOC_Os03g46570
Os.49537.1.S1_x_at--378--711Chr03:26312602..26312626 (25 bp)
ATGAGGCAGTACTCGCAGGTGTGCG
LOC_Os03g46570
Os.49537.1.S1_x_at--607--4391Chr03:26313377..26313401 (25 bp)
GCCAAGAATGGCAGCGTCAGCGTCA
LOC_Os03g46570
Os.49537.1.S1_x_at--105--7111Chr03:26313392..26313416 (25 bp)
GTCAGCGTCAACTTTTCGTGAGCGA
NONE
Os.49537.1.S1_x_at--24--3271Chr03:26313400..26313424 (25 bp)
CAACTTTTCGTGAGCGATGGCGGAG
NONE
Os.49537.1.S1_x_at--191--10572Chr08:19251715..19251736 (22 bp)
TTCTTTTCTGTTTTGGTTTAGCTGA
LOC_Os08g31340
Os.49537.1.S1_x_at--1014--271Chr03:26313533..26313557 (25 bp)
ATAGGGCGATATGGTCTAATGATGT
NONE
Os.49537.1.S1_x_at--1017--8891Chr03:26313571..26313595 (25 bp)
TGAGTTTTCCTTTTTTGTGTTGGAT
NONE
Os.49537.1.S1_x_at--817--10371Chr03:26313581..26313605 (25 bp)
TTTTTTGTGTTGGATCAATTTGATC
NONE
Target Sequence 
TCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCATCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCT
CCCACCACCGATCCAGCCTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCNGCCGCCGGCNAGGTTNTCG
TCGGCGGCGCCNGTGGCGNGNTGATGGCGGGGCTTTGCCAGGAGGAGCANCTNGTNCANGGGTACCGCCANGTGTTTGTT
GGAGGTGGTGGGGTGAGGCAGCCGGCGGCGGCGGAGGTGATGAGGCAGTACTCGCAGGTGTGCGCGGCGGCGGCGGACGC
GGCGTGCCCGGCGTGCGGGTGCGCCAAGAATGGCAGCGTCAGCGTCAACTTTTCGTGAGCGATGGCGGAGGGAAAGGAGT
AATAGCAATTAGACTAGATTTTTTTTCTTTTCTTTTCTTTTTTTTCTCTCTCTCCTCCGTTTTTTTTCTTTTCTGTTTTG
GTTTAGCTGATGGGGATAATAGGGCGATATGGTCTAATGATGTGGATATGAGGGGATGAGTTTTCCTTTTTTGTGTTGGA
TCAATTTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49537.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis