Browse Element(s) Details


Os.8039.1.S1_at

Description gb:AK063633.1
DB_XREF= gi:32973651
TID=Os.8039.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8039 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F11, full insert sequence.
FL= gb:AK063742.1 gb:AK063633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4664011/11Deoxyuridine 5'-triphosphate nucleotidohydrolase, putative, expressed
LOC_Os06g307401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46590Os.14919.1.S1_at3/113+26320324..26324849transposon protein, putative, Mutator sub-class
LOC_Os03g46590OsAffx.29313.1.S1_at1/113+26320324..26324849transposon protein, putative, Mutator sub-class
LOC_Os03g46590Os.56216.1.S1_at1/113+26320324..26324849transposon protein, putative, Mutator sub-class
LOC_Os03g46600Os.55587.1.S1_at11/113+26326865..26329081Leucine Rich Repeat family protein, expressed
LOC_Os03g46610Os.53765.1.S1_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46610Os.5421.1.S1_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46610Os.5421.1.S1_s_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46620Os.38764.1.S1_x_at5/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46620Os.10731.1.A1_a_at2/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46620Os.45173.1.S1_x_at2/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46630NANA3+26341863..26343734retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46640Os.8039.1.S1_at11/113+26345472..26346656Deoxyuridine 5'-triphosphate nucleotidohydrolase, putative, expressed
LOC_Os03g46650Os.10.1.S1_s_at11/113+26347808..26355758Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os03g46650OsAffx.25583.1.S1_at11/113+26347808..26355758Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os03g46660Os.21574.1.S1_a_at11/113+26356927..26359742Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g46674NANA3+26367389..26368943transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009394biological_process2'-deoxyribonucleotide metabolism
GO:0004170molecular_functiondUTP diphosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8039.1.S1_at--1142--2211Chr03:26346409..26346433 (25 bp)
ACAAGATCGCCAAGGTTGCTCCCTT
LOC_Os03g46640
Os.8039.1.S1_at--1010--3611Chr03:26346387..26346411 (25 bp)
CTTGCTCAAGGTCAAGAAGCTCTCC
LOC_Os03g46640
Os.8039.1.S1_at--124--8991Chr03:26346006..26346030 (25 bp)
TGAAGCACTCGATCGACGTAGGCGC
LOC_Os03g46640
Os.8039.1.S1_at--509--5831Chr03:26345896..26345920 (25 bp)
GACCGGATCGCGCAGATGATCATCG
LOC_Os03g46640
Os.8039.1.S1_at--1061--3351Chr03:26345769..26345790 (22 bp)
CACCGTCGTTAGCTCCAGGAAGTTG
LOC_Os03g46640
Os.8039.1.S1_at--949--6731Chr03:26345739..26345763 (25 bp)
GTTCATTTGGTCTGTGATGGATGGA
LOC_Os03g46640
Os.8039.1.S1_at--12--8731Chr03:26345707..26345731 (25 bp)
TGTCGTGATGAAACACTTGTATCCT
LOC_Os03g46640
Os.8039.1.S1_at--938--2031Chr03:26345693..26345717 (25 bp)
ACTTGTATCCTCTTAATGCCTCGGA
LOC_Os03g46640
Os.8039.1.S1_at--658--592Chr06:17831661..17831794 (24 bp)
ATGCCTCGGATGCTTTTGTGGTGTC
LOC_Os06g30740
Os.8039.1.S1_at--448--7451Chr03:26345658..26345682 (25 bp)
GTGTCGAATGGAATCATCTAGCCTA
LOC_Os03g46640
Os.8039.1.S1_at--957--5571Chr03:26345622..26345646 (25 bp)
GAAATTCGTATGCTTTTGCGGTGTT
LOC_Os03g46640
Target Sequence 
ACAAGATCGCCAAGGTTGCTCCCTTGCTCAAGGTCAAGAAGCTCTCCGAGAACGCCGTCCTGCCGTCCCGCGGCTCCGCC
CTCGCCGNCCGGCTACGACCTGTCGAGCGCGGCGGAGGTCGTCGTGCCGGCGAGGGGGAAGGCGATGGTGCCGACGGACC
TCAGCATCGCCATCCCGGAGGGCACCTACGCGCGCGTCGCGCCGAGGTCTGGGCTGGCGTTGAAGCACTCGATCGACGTA
GGCGCCGGGGTGATCGACGCCGACTACCGTGGCCCGGTAGGGGTCATCCTCTTCAACCACTCCGACACCGACTTCGCCGT
GAAGCCCGGCGACCGGATCGCGCAGATGATCATCGAGGTGATCGTGACGCCGGAGGTCGCCGAGGTGGAGGACCTCGACG
CCACCGTCGTTAGCTCCAGGAAGTTGGGGGAGTTCATTTGGTCTGTGATGGATGGATGGGTGATGTCGTGATGAAACACT
TGTATCCTCTTAATGCCTCGGATGCTTTTGTGGTGTCGAATGGAATCATCTAGCCTAATGAATCTAATGAAATTCGTATG
CTTTTGCGGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis