Browse Element(s) Details


Os.21578.1.S1_at

Description gb:AK101035.1
DB_XREF= gi:32986244
TID=Os.21578.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21578 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150P14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150P14, full insert sequence.
FL= gb:AK101035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4437011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44350OsAffx.27771.1.S1_x_at11/112+26822577..26824805AT hook motif-containing protein, putative
LOC_Os02g44350OsAffx.27771.2.S1_s_at11/112+26822577..26824805AT hook motif-containing protein, putative
LOC_Os02g44360Os.2406.2.S1_a_at11/112+26835716..26838437GRAS family transcription factor containing protein, expressed
LOC_Os02g44370Os.21578.1.S1_at11/112+26846213..26849103GRAS family transcription factor containing protein, expressed
LOC_Os02g44380OsAffx.24722.1.S1_at11/112+26861140..26880311Beige/BEACH domain containing protein, expressed
LOC_Os02g44380Os.53748.1.S1_at1/112+26861140..26880311Beige/BEACH domain containing protein, expressed
LOC_Os02g44380Os.53748.2.S1_x_at1/112+26861140..26880311Beige/BEACH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21578.1.S1_at--278--3411Chr02:26848586..26848610 (25 bp)
CAGCAGCTGGGTTTAAGCCTGTTCC
LOC_Os02g44370
Os.21578.1.S1_at--933--7371Chr02:26848721..26848745 (25 bp)
GTGAGCTTGTCTCCATATCATCATG
LOC_Os02g44370
Os.21578.1.S1_at--549--1651Chr02:26848790..26848814 (25 bp)
AGCGCTTGCAAGCATTGTCAACTCC
LOC_Os02g44370
Os.21578.1.S1_at--867--8731Chr02:26848805..26848829 (25 bp)
TGTCAACTCCAGTAATGTGCATTTT
LOC_Os02g44370
Os.21578.1.S1_at--910--6631Chr02:26848860..26848884 (25 bp)
GTTGTCTCAAGTTGTTGAACACCTC
LOC_Os02g44370
Os.21578.1.S1_at--777--2471Chr02:26848877..26848901 (25 bp)
AACACCTCATATTGCTTTTCATCAC
LOC_Os02g44370
Os.21578.1.S1_at--1129--371Chr02:26848897..26848921 (25 bp)
ATCACAGCTTATTAGCTAGGCCTAG
LOC_Os02g44370
Os.21578.1.S1_at--756--5191Chr02:26848930..26848954 (25 bp)
GCAATATCGGTGTCAATCTCTGTAG
LOC_Os02g44370
Os.21578.1.S1_at--853--711Chr02:26848958..26848982 (25 bp)
ATGATGCTGCTTTAGGTTCTTACCA
LOC_Os02g44370
Os.21578.1.S1_at--1115--10551Chr02:26848974..26848998 (25 bp)
TTCTTACCATGCTCTGCTCTATTAG
LOC_Os02g44370
Os.21578.1.S1_at--690--9091Chr02:26848988..26849012 (25 bp)
TGCTCTATTAGCCATTATCATCAAA
LOC_Os02g44370
Target Sequence 
CAGCAGCTGGGTTTAAGCCTGTTCCNCCCAGCAACCTTGCCGAGGCACAGGCAGACTGCCTCCTGAAGCGAGTGCAGGTC
CGAGGATTCCATGTGGAGAAGNGCGGAGCTGCTCTCACGCTCTACTGGCAGCGTGGTGAGCTTGTCTCCATATCATCATG
GCGGTGCTGATCAGCCATAAGCTTCACCCCACCAACGTTCCACCAGCGCTTGCAAGCATTGTCAACTCCAGTAATGTGCA
TTTTGTTTTGCAATTAAATGTTGCAACGGAAATTGTTGTCTCAAGTTGTTGAACACCTCATATTGCTTTTCATCACAGCT
TATTAGCTAGGCCTAGTGGATTTAGCAATATCGGTGTCAATCTCTGTAGTTAATGATGCTGCTTTAGGTTCTTACCATGC
TCTGCTCTATTAGCCATTATCATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis