Browse Element(s) Details


OsAffx.24722.1.S1_at

Description tigr:9630.m04293
TID=OsAffx.24722.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BeigeBEACH domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4438011/11Beige/BEACH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44360Os.2406.2.S1_a_at11/112+26835716..26838437GRAS family transcription factor containing protein, expressed
LOC_Os02g44370Os.21578.1.S1_at11/112+26846213..26849103GRAS family transcription factor containing protein, expressed
LOC_Os02g44380OsAffx.24722.1.S1_at11/112+26861140..26880311Beige/BEACH domain containing protein, expressed
LOC_Os02g44380Os.53748.1.S1_at1/112+26861140..26880311Beige/BEACH domain containing protein, expressed
LOC_Os02g44380Os.53748.2.S1_x_at1/112+26861140..26880311Beige/BEACH domain containing protein, expressed
LOC_Os02g44390Os.31312.2.S1_x_at2/112+26883317..26886618retrotransposon protein, putative, unclassified
LOC_Os02g44390Os.31312.5.S1_x_at2/112+26883317..26886618retrotransposon protein, putative, unclassified
LOC_Os02g44400NANA2+26887255..26889882transposon protein, putative, unclassified
LOC_Os02g44410NANA2+26890174..26893383retrotransposon protein, putative, unclassified
LOC_Os02g44420OsAffx.19826.2.S1_at5/112+26894170..26894981hypothetical protein
LOC_Os02g44430Os.55650.1.A1_at7/112+26896819..26898680transposon protein, putative, unclassified
LOC_Os02g44430OsAffx.21756.5.A1_x_at5/112+26896819..26898680transposon protein, putative, unclassified
LOC_Os02g44430Os.7307.3.S1_x_at2/112+26896819..26898680transposon protein, putative, unclassified
LOC_Os02g44440NANA2+26901457..26903865retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24722.1.S1_at--967--8791Chr02:26862000..26862024 (25 bp)
TGTTCTGTTAGTTCTGCCTTGGGAC
LOC_Os02g44380
OsAffx.24722.1.S1_at--332--10851Chr02:26861982..26862006 (25 bp)
TTGGGACTTGTTGCTTCCTCTTCAA
LOC_Os02g44380
OsAffx.24722.1.S1_at--366--10651Chr02:26861968..26861992 (25 bp)
TTCCTCTTCAAGTACGTCTGGTGTC
LOC_Os02g44380
OsAffx.24722.1.S1_at--1148--7171Chr02:26861953..26861977 (25 bp)
GTCTGGTGTCCTTCTACATAATTTG
LOC_Os02g44380
OsAffx.24722.1.S1_at--159--851Chr02:26861807..26861831 (25 bp)
ATGGAATCCCGATTGGTACCTCGGT
LOC_Os02g44380
OsAffx.24722.1.S1_at--434--5551Chr02:26861779..26861803 (25 bp)
GACACCTTTCTCTGGTCGAGTTAGT
LOC_Os02g44380
OsAffx.24722.1.S1_at--295--8231Chr02:26861733..26861757 (25 bp)
GGCAAGTTTGCTTTGATCGGAACAT
LOC_Os02g44380
OsAffx.24722.1.S1_at--644--491Chr02:26861718..26861742 (25 bp)
ATCGGAACATGCTTGTCCAACAGTT
LOC_Os02g44380
OsAffx.24722.1.S1_at--411--3191Chr02:26861692..26861716 (25 bp)
CAATCGTGATGGTTTTAGTGCTATA
LOC_Os02g44380
OsAffx.24722.1.S1_at--239--8911Chr02:26861614..26861638 (25 bp)
TGAGACTAAGCCCTCTGTTCATGTG
LOC_Os02g44380
OsAffx.24722.1.S1_at--593--4291Chr02:26861588..26861612 (25 bp)
CCTCGGTCTGCTTCATTGATCTATA
LOC_Os02g44380
Target Sequence 
TGTTCTGTTAGTTCTGCCTTGGGACTTGTTGCTTCCTCTTCAAGTACGTCTGGTGTCCTTCTACATAATTTGAGGACAGG
CAGGCTCATTAGGAAGCTGGATAAACAGGAGGCACATTTAATGTGTTTATCTTCTGAAGGAATCATATTGATTTGGAATG
AATCAGAGAAAAGATTATCGACATTCACTGTTAATGGAATCCCGATTGGTACCTCGGTTCTGACACCTTTCTCTGGTCGA
GTTAGTTGCATTGAGATTTCTGTGGATGGCAAGTTTGCTTTGATCGGAACATGCTTGTCCAACAGTTGCAATCGTGATGG
TTTTAGTGCTATAGATGATTATGAGCTTGACAAACCCAACGGTGATGATGATTTGCCAGAATTAAATGAGACTAAGCCCT
CTGTTCATGTGCCCTCGGTCTGCTTCATTGATCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis