Browse Element(s) Details


Os.21635.1.S1_at

Description gb:AF543419.1
DB_XREF= gi:23452822
GEN=mfs2
TID=Os.21635.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21635 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) major facilitator superfamily antiporter (mfs2) mRNA, complete cds.
PROD=major facilitator superfamily antiporter
FL= gb:AF543419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0386010/11major facilitator superfamily antiporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03810Os.10274.4.S1_at11/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03810OsAffx.31568.1.S1_at11/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03810Os.10274.1.S1_a_at10/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03816Os.10274.3.S1_at11/1112+1558859..1560568Calmodulin, putative, expressed
LOC_Os12g03816OsAffx.31569.1.S1_x_at8/1112+1558859..1560568Calmodulin, putative, expressed
LOC_Os12g03822Os.49735.1.S1_x_at11/1112+1561209..1562743Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os12g03822OsAffx.31569.1.S1_x_at2/1112+1561209..1562743Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os12g03830Os.18707.1.S1_at1/1112+1567001..1571324major facilitator superfamily antiporter, putative
LOC_Os12g03840NANA12+1572521..1573733retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g03850NANA12+1574190..1576956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g03860Os.21635.1.S1_at10/1112+1583176..1588111major facilitator superfamily antiporter, putative, expressed
LOC_Os12g03870NANA12+1593733..1599962major facilitator superfamily antiporter, putative
LOC_Os12g03880Os.25811.1.S1_at11/1112+1600954..160343260S acidic ribosomal protein P0, putative, expressed
LOC_Os12g03899OsAffx.19475.1.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.1.S1_a_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.19475.1.S1_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_s_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.3.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.27782.1.S1_at1/1112+1605095..1619843transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21635.1.S1_at--566--8511Chr12:1584324..1584348 (25 bp)
TGGAATAGCCACAACAGCCATGTCC
LOC_Os12g03860
Os.21635.1.S1_at--1162--10771Chr12:1584299..1584323 (25 bp)
TTGTTCAAGGCTATTGCTCCGGCTG
LOC_Os12g03860
Os.21635.1.S1_at--168--3651Chr12:1583458..1583482 (25 bp)
CTTCTACTGAATCTGACCGAGGTCA
LOC_Os12g03860
Os.21635.1.S1_at--1082--1771Chr12:1583443..1583467 (25 bp)
ACCGAGGTCATTGGGCTCATGTTAA
LOC_Os12g03860
Os.21635.1.S1_at--705--10531Chr12:1583373..1583397 (25 bp)
TTCAGATACTGCTAGCTGGTGTGAC
LOC_Os12g03860
Os.21635.1.S1_at--399--9891Chr12:1583367..1583391 (25 bp)
TACTGCTAGCTGGTGTGACAAAGAT
LOC_Os12g03860
Os.21635.1.S1_at--252--1311Chr12:1583295..1583319 (25 bp)
AGATGGTTTAGATGTGGTTATAGCA
LOC_Os12g03860
Os.21635.1.S1_at--544--2971Chr12:1583269..1583293 (25 bp)
AATGGTAGGATCATGCAGCATTCCA
LOC_Os12g03860
Os.21635.1.S1_at--856--10071Chr12:1583264..1583288 (25 bp)
TAGGATCATGCAGCATTCCAGTGCA
LOC_Os12g03860
Os.21635.1.S1_at--224--3231Chr12:1583200..1583224 (25 bp)
CAAGATAACCTTGTATATTGCAGTG
LOC_Os12g03860
Os.21635.1.S1_at--107--6671Chr12:1583176..1583200 (25 bp)
GTTGAATTTGAATAACTGCTCTTCT
NONE
Target Sequence 
TGGAATAGCCACAACAGCCATGTCCTTGTTCAAGGCTATTGCTCCGGCTGGGGCAGNNNNNATNTNTTNNTNGNNNNNNN
ANAGNCNNCNNNTGNNNNTNNTNNNAGGTGACCAGATGGTATTTCTTCTACTGAATCTGACCGAGGTCATTGGGCTCATG
TTAACCTTCAAACCTTTNTTGGCTGTTCCTCANCAATATAAATAGAACATTCAGATACTGCTAGCTGGTGTGACAAAGAT
CATAAAGANGTAGTTACAGTGAGTANTAAGTATGGCTTGGTATTAAAAGATGGTTTAGATGTGGTTATAGCATAATGGTA
GGATCATGCAGCATTCCAGTGCANAGTCTCTGTTGGATTTTGTTCTGCTTTGGNCTTATGAGCAAGATAACCTTGTATAT
TGCAGTGTTGAATTTGAATAACTGCTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis