Browse Element(s) Details


Os.21805.1.S1_s_at

Description gb:CA756790
DB_XREF= gi:25800829
DB_XREF=OC105B10_T3.CRO
CLONE=OC105B10_T3.CRO
TID=Os.21805.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.21805 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein sp:P46688 (A.thaliana) GAS2_ARATH Gibberellin-regulated protein 2 precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5132011/11Gibberellin regulated protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51300NANA6+31062170..31062451hypothetical protein
LOC_Os06g51310Os.18590.1.S1_a_at11/116+31068078..31076380PINHEAD protein, putative, expressed
LOC_Os06g51320Os.21805.1.S1_s_at11/116+31081748..31082643Gibberellin regulated protein, expressed
LOC_Os06g51330OsAffx.5164.1.S1_at1/116+31082617..31092279BNR/Asp-box repeat family protein, expressed
LOC_Os06g51340OsAffx.29536.5.S1_x_at1/116+31096292..31098021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g51340OsAffx.28971.1.S1_at1/116+31096292..31098021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g51350OsAffx.5165.1.S1_at11/116+31099115..31101230tRNA isopentenyltransferase 9, putative, expressed
LOC_Os06g51360Os.7625.1.A1_s_at11/116+31104381..31106964LysM domain containing protein, expressed
LOC_Os06g51360OsAffx.28211.1.S1_at11/116+31104381..31106964LysM domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0009826biological_processunidimensional cell growth
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21805.1.S1_s_at--1094--8371Chr06:31082244..31082268 (25 bp)
GGCGATGCGCCAACAACTGGAAGAA
LOC_Os06g51320
Os.21805.1.S1_s_at--346--2791Chr06:31082282..31082306 (25 bp)
AAGATGTGCAACGTCTGCTGCAACC
LOC_Os06g51320
Os.21805.1.S1_s_at--1059--9111Chr06:31082297..31082321 (25 bp)
TGCTGCAACCGATGCAACTGCGTTC
LOC_Os06g51320
Os.21805.1.S1_s_at--971--4171Chr06:31082356..31082380 (25 bp)
CCCTTGCTACGACACCATGGTTAAT
LOC_Os06g51320
Os.21805.1.S1_s_at--278--5171Chr06:31082391..31082415 (25 bp)
GCAAGCTCAAGTGCCCATGATTCCT
LOC_Os06g51320
Os.21805.1.S1_s_at--367--91Chr06:31082410..31082434 (25 bp)
ATTCCTTCCTTCCTATTAGCTGCTG
LOC_Os06g51320
Os.21805.1.S1_s_at--854--4771Chr06:31082428..31082452 (25 bp)
GCTGCTGCTATTGCTCTCAGAGAGA
LOC_Os06g51320
Os.21805.1.S1_s_at--887--6991Chr06:31082481..31082505 (25 bp)
GTACGTATGTGTTCCATGCATCTTG
LOC_Os06g51320
Os.21805.1.S1_s_at--403--3911Chr06:31082527..31082551 (25 bp)
CTGGCTGTCACTACTAGCTTAGCTA
LOC_Os06g51320
Os.21805.1.S1_s_at--173--10011Chr06:31082546..31082570 (25 bp)
TAGCTACTACATAGGACTGCTCTAT
LOC_Os06g51320
Os.21805.1.S1_s_at--930--1291Chr06:31082576..31082600 (25 bp)
AGATGCCTTTCTACTTTCTTCAATC
LOC_Os06g51320
Target Sequence 
GGCGATGCGCCAACAACTGGAAGAAGGAGATGTGCAACAAGATGTGCAACGTCTGCTGCAACCGATGCAACTGCGTTCCC
CCGGGAAGTGGGCAGGACACCCGCCACCTCTGCCCTTGCTACGACACCATGGTTAATCCACACAACGGCAAGCTCAAGTG
CCCATGATTCCTTCCTTCCTATTAGCTGCTGCTATTGCTCTCAGAGAGATCAGAGTACAATGTACTTGGTAGTATGTGTA
CGTATGTGTTCCATGCATCTTGATGTTCAATCCCTTCATCTCTCTGGCTGTCACTACTAGCTTAGCTACTACATAGGACT
GCTCTATATAATAGATGCCTTTCTACTTTCTTCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21805.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis