Browse Element(s) Details

OsAffx.28211.1.S1_at

Description

tigr:9634.m05000
TID=OsAffx.28211.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=LysM domain, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51360	11/11	LysM domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g51320	Os.21805.1.S1_s_at	11/11	6	+	31081748..31082643	Gibberellin regulated protein, expressed
LOC_Os06g51330	OsAffx.5164.1.S1_at	1/11	6	+	31082617..31092279	BNR/Asp-box repeat family protein, expressed
LOC_Os06g51340	OsAffx.29536.5.S1_x_at	1/11	6	+	31096292..31098021	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g51340	OsAffx.28971.1.S1_at	1/11	6	+	31096292..31098021	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g51350	OsAffx.5165.1.S1_at	11/11	6	+	31099115..31101230	tRNA isopentenyltransferase 9, putative, expressed
LOC_Os06g51360	Os.7625.1.A1_s_at	11/11	6	+	31104381..31106964	LysM domain containing protein, expressed
LOC_Os06g51360	OsAffx.28211.1.S1_at	11/11	6	+	31104381..31106964	LysM domain containing protein, expressed
LOC_Os06g51370	OsAffx.28212.1.S1_at	11/11	6	+	31108239..31110246	Serine carboxypeptidase II precursor, putative
LOC_Os06g51380	Os.38358.1.S1_x_at	7/11	6	+	31117749..31120975	root hairless 1, putative, expressed
LOC_Os06g51380	Os.38358.1.S1_at	6/11	6	+	31117749..31120975	root hairless 1, putative, expressed
LOC_Os06g51380	Os.10848.1.A1_x_at	6/11	6	+	31117749..31120975	root hairless 1, putative, expressed
LOC_Os06g51380	Os.27044.1.A1_at	1/11	6	+	31117749..31120975	root hairless 1, putative, expressed
LOC_Os06g51390	Os.11834.1.S1_at	11/11	6	+	31126432..31129684	expressed protein
LOC_Os06g51400	Os.10478.1.S1_at	11/11	6	+	31131894..31135053	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0016998	biological_process	cell wall catabolism

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28211.1.S1_at--245--951	1	Chr06:31106302..31106326 (25 bp)	TCTCTATGTGGTCAAGCTCGGCATG	LOC_Os06g51360
OsAffx.28211.1.S1_at--290--783	1	Chr06:31106311..31106335 (25 bp)	GGTCAAGCTCGGCATGGACTTTCAA	LOC_Os06g51360
OsAffx.28211.1.S1_at--71--269	1	Chr06:31106315..31106339 (25 bp)	AAGCTCGGCATGGACTTTCAACCAT	LOC_Os06g51360
OsAffx.28211.1.S1_at--219--501	1	Chr06:31106322..31106346 (25 bp)	GCATGGACTTTCAACCATGAGTCGT	LOC_Os06g51360
OsAffx.28211.1.S1_at--676--389	1	Chr06:31106423..31106447 (25 bp)	CTGTGGCTGTAGTAGGTTTGTCTGC	LOC_Os06g51360
OsAffx.28211.1.S1_at--753--693	1	Chr06:31106434..31106458 (25 bp)	GTAGGTTTGTCTGCGATGATCCAAC	LOC_Os06g51360
OsAffx.28211.1.S1_at--1108--685	1	Chr06:31106438..31106462 (25 bp)	GTTTGTCTGCGATGATCCAACTTGA	LOC_Os06g51360
OsAffx.28211.1.S1_at--977--461	1	Chr06:31106446..31106470 (25 bp)	GCGATGATCCAACTTGAATTTGCCA	LOC_Os06g51360
OsAffx.28211.1.S1_at--913--635	1	Chr06:31106451..31106475 (25 bp)	GATCCAACTTGAATTTGCCAAGAAG	LOC_Os06g51360
OsAffx.28211.1.S1_at--532--295	1	Chr06:31106488..31106512 (25 bp)	AATGGAAGTTGTGGCTTGGCTTGTT	LOC_Os06g51360
OsAffx.28211.1.S1_at--139--867	1	Chr06:31106497..31106521 (25 bp)	TGTGGCTTGGCTTGTTTTCAGAGTT	LOC_Os06g51360

Target Sequence

TCTCTATGTGGTCAAGCTCGGCATGGACTTTCAACCATGAGTCGTTCACGCGACCATTGCTTGATGGCCTTCCGAAACCC
ACAGCACCTAGGAGGACCAAAGCTGCTTTGGATTGAGCTGCCTGTGGCTGTAGTAGGTTTGTCTGCGATGATCCAACTTG
AATTTGCCAAGAAGAAGCCGGTGGAAAATGGAAGTTGTGGCTTGGCTTGTTTTCAGAGTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis