Browse Element(s) Details


Os.11834.1.S1_at

Description gb:AK099901.1
DB_XREF= gi:32985110
TID=Os.11834.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013114F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114F10, full insert sequence.
FL= gb:AK099901.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5139011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51360Os.7625.1.A1_s_at11/116+31104381..31106964LysM domain containing protein, expressed
LOC_Os06g51360OsAffx.28211.1.S1_at11/116+31104381..31106964LysM domain containing protein, expressed
LOC_Os06g51370OsAffx.28212.1.S1_at11/116+31108239..31110246Serine carboxypeptidase II precursor, putative
LOC_Os06g51380Os.38358.1.S1_x_at7/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51380Os.38358.1.S1_at6/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51380Os.10848.1.A1_x_at6/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51380Os.27044.1.A1_at1/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51390Os.11834.1.S1_at11/116+31126432..31129684expressed protein
LOC_Os06g51400Os.10478.1.S1_at11/116+31131894..31135053expressed protein
LOC_Os06g51410Os.9263.1.S1_s_at11/116+31135694..31144707prolyl oligopeptidase family protein, expressed
LOC_Os06g51410Os.9263.1.S1_at11/116+31135694..31144707prolyl oligopeptidase family protein, expressed
LOC_Os06g51420Os.53248.1.A1_at11/116+31146959..31149547coiled-coil domain containing 12, putative, expressed
LOC_Os06g51430Os.51219.1.S1_at11/116+31150350..31155613signal peptide peptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11834.1.S1_at--1060--831Chr06:31129130..31129154 (25 bp)
ATGGAGCTATTGTCGTCGAAGCAGC
LOC_Os06g51390
Os.11834.1.S1_at--1043--4391Chr06:31129153..31129177 (25 bp)
GCCAAAATGCCCACAGCTGTACATA
LOC_Os06g51390
Os.11834.1.S1_at--593--1571Chr06:31129181..31129205 (25 bp)
AGCTCTGCTGACAGGGTAATCCCGG
LOC_Os06g51390
Os.11834.1.S1_at--1065--7051Chr06:31129196..31129220 (25 bp)
GTAATCCCGGCCAAGTCGGTGGAGT
LOC_Os06g51390
Os.11834.1.S1_at--271--2031Chr06:31129296..31129320 (25 bp)
ACTACCGGAGCAATCCAGAGCTGTA
LOC_Os06g51390
Os.11834.1.S1_at--298--8771Chr06:31129317..31129341 (25 bp)
TGTATACCTCTCAGCTCACTGAATT
LOC_Os06g51390
Os.11834.1.S1_at--235--10531Chr06:31129340..31129364 (25 bp)
TTCATGGAGGACTGCGTGTTGGCCC
LOC_Os06g51390
Os.11834.1.S1_at--667--6151Chr06:31129388..31129412 (25 bp)
GAGGAGGTCACCAACTAACTAAGAT
LOC_Os06g51390
Os.11834.1.S1_at--229--9571Chr06:31129484..31129508 (25 bp)
TCTTCACTGGCGCTCAATTGCAAAG
LOC_Os06g51390
Os.11834.1.S1_at--641--7031Chr06:31129568..31129592 (25 bp)
GTACACTACTGTTTTCTTTCGTCTC
LOC_Os06g51390
Os.11834.1.S1_at--958--9391Chr06:31129591..31129615 (25 bp)
TCGTCTCATACTCTCATTGGTGGGA
LOC_Os06g51390
Target Sequence 
ATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAA
GTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTGTGTCGTCGCCTCATG
TCGACCACTACCGGAGCAATCCAGAGCTGTATACCTCTCAGCTCACTGAATTCATGGAGGACTGCGTGTTGGCCCGCTGC
CAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAG
ATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGA
GGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTG
GTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis