Browse Element(s) Details


Os.10478.1.S1_at

Description gb:AK101650.1
DB_XREF= gi:32986859
TID=Os.10478.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033056M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033056M19, full insert sequence.
FL= gb:AK101650.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5140011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51360Os.7625.1.A1_s_at11/116+31104381..31106964LysM domain containing protein, expressed
LOC_Os06g51360OsAffx.28211.1.S1_at11/116+31104381..31106964LysM domain containing protein, expressed
LOC_Os06g51370OsAffx.28212.1.S1_at11/116+31108239..31110246Serine carboxypeptidase II precursor, putative
LOC_Os06g51380Os.38358.1.S1_x_at7/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51380Os.38358.1.S1_at6/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51380Os.10848.1.A1_x_at6/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51380Os.27044.1.A1_at1/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51390Os.11834.1.S1_at11/116+31126432..31129684expressed protein
LOC_Os06g51400Os.10478.1.S1_at11/116+31131894..31135053expressed protein
LOC_Os06g51410Os.9263.1.S1_s_at11/116+31135694..31144707prolyl oligopeptidase family protein, expressed
LOC_Os06g51410Os.9263.1.S1_at11/116+31135694..31144707prolyl oligopeptidase family protein, expressed
LOC_Os06g51420Os.53248.1.A1_at11/116+31146959..31149547coiled-coil domain containing 12, putative, expressed
LOC_Os06g51430Os.51219.1.S1_at11/116+31150350..31155613signal peptide peptidase family protein, expressed
LOC_Os06g51440Os.47871.1.S1_at10/116+31156331..31157286transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10478.1.S1_at--129--6371Chr06:31134194..31134218 (25 bp)
GATCCAAGACGCCAATGGGTGCCAA
LOC_Os06g51400
Os.10478.1.S1_at--453--10672Chr07:3799837..3799857 (21 bp)
TTCCTGGTAGGTTAGCACTTAGCAC
NONE
Os.10478.1.S1_at--66--3032Chr07:3799890..3799914 (25 bp)
AATGCGATTGGTGTTTCTGTCTGGC
NONE
Os.10478.1.S1_at--154--9471Chr06:31134676..31134700 (25 bp)
TCTGTCTGGCTGGTGGCTCGCAAAT
LOC_Os06g51400
Os.10478.1.S1_at--752--2551Chr06:31134759..31134783 (25 bp)
AACTGATCCATCCTTCCAATGTAGG
LOC_Os06g51400
Os.10478.1.S1_at--686--10091Chr06:31134780..31134804 (25 bp)
TAGGCAAGCAACTCGGCTGAGCATT
LOC_Os06g51400
Os.10478.1.S1_at--525--8911Chr06:31134797..31134821 (25 bp)
TGAGCATTTCCATCTTGCACTGAAT
LOC_Os06g51400
Os.10478.1.S1_at--1113--1833Chr06:31134849..31134873 (25 bp)
ACGCAATTTCCATGTACTCCAGTTT
LOC_Os06g51400
Os.10478.1.S1_at--1085--6831Chr06:31134870..31134894 (25 bp)
GTTTCTGAGTAACCACCAGTTGCAT
LOC_Os06g51400
Os.10478.1.S1_at--1045--4971Chr06:31134891..31134915 (25 bp)
GCATCGCATGTCACGAATGTCAGCA
LOC_Os06g51400
Os.10478.1.S1_at--176--151Chr06:31134939..31134963 (25 bp)
ATTACTATCCGAATGCATACCGAGT
LOC_Os06g51400
Target Sequence 
GATCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGGGTGGCTCAGCGAGGAAGGTAGAAAGAAA
AGAACACCGGCGAGTCAAAGATAGCAGTGAGCAAGCATAGATAGACCATGATTATTCCTGGTAGGTTAGCACTTAGCACT
GGAGATTTGGTGTTAAAACTTGCAATGCGATTGGTGTTTCTGTCTGGCTGGTGGCTCGCAAATGTAGAAGACATGGTGTC
ACAACTGGAGTACATGGAAATTGAAATGTTTCATGGCAGCCAACTGATCCATCCTTCCAATGTAGGCAAGCAACTCGGCT
GAGCATTTCCATCTTGCACTGAATCAAACTAACCACCACAACAANGCTTGCACGCAATTTCCATGTACTCCAGTTTCTGA
GTAACCACCAGTTGCATCGCATGTCACGAATGTCAGCAAATGCTCAGCTGATCACATTACTATTACTATCCGAATGCATA
CCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis