Browse Element(s) Details


Os.7625.1.A1_s_at

Description gb:AU101599
DB_XREF= gi:9865849
DB_XREF=AU101599
CLONE=R0220
TID=Os.7625.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7625 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T50505 (A.thaliana) T50505 hypothetical protein T22D6.140 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5136011/11LysM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51320Os.21805.1.S1_s_at11/116+31081748..31082643Gibberellin regulated protein, expressed
LOC_Os06g51330OsAffx.5164.1.S1_at1/116+31082617..31092279BNR/Asp-box repeat family protein, expressed
LOC_Os06g51340OsAffx.29536.5.S1_x_at1/116+31096292..31098021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g51340OsAffx.28971.1.S1_at1/116+31096292..31098021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g51350OsAffx.5165.1.S1_at11/116+31099115..31101230tRNA isopentenyltransferase 9, putative, expressed
LOC_Os06g51360Os.7625.1.A1_s_at11/116+31104381..31106964LysM domain containing protein, expressed
LOC_Os06g51360OsAffx.28211.1.S1_at11/116+31104381..31106964LysM domain containing protein, expressed
LOC_Os06g51370OsAffx.28212.1.S1_at11/116+31108239..31110246Serine carboxypeptidase II precursor, putative
LOC_Os06g51380Os.38358.1.S1_x_at7/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51380Os.38358.1.S1_at6/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51380Os.10848.1.A1_x_at6/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51380Os.27044.1.A1_at1/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51390Os.11834.1.S1_at11/116+31126432..31129684expressed protein
LOC_Os06g51400Os.10478.1.S1_at11/116+31131894..31135053expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016998biological_processcell wall catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7625.1.A1_s_at--1033--9391Chr06:31106343..31106367 (25 bp)
TCGTTCACGCGACCATTGCTTGATG
LOC_Os06g51360
Os.7625.1.A1_s_at--654--1731Chr06:31106354..31106378 (25 bp)
ACCATTGCTTGATGGCCTTCCGAAA
LOC_Os06g51360
Os.7625.1.A1_s_at--61--10231Chr06:31106371..31106395 (25 bp)
TTCCGAAACCCACAGCACCTAGGAG
LOC_Os06g51360
Os.7625.1.A1_s_at--40--3371Chr06:31106386..31106410 (25 bp)
CACCTAGGAGGACCAAAGCTGCTTT
LOC_Os06g51360
Os.7625.1.A1_s_at--157--1611Chr06:31106402..31106426 (25 bp)
AGCTGCTTTGGATTGAGCTGCCTGT
LOC_Os06g51360
Os.7625.1.A1_s_at--116--9071Chr06:31106559..31106583 (25 bp)
TGCATTCTTCATCTTACCTGTGGCA
LOC_Os06g51360
Os.7625.1.A1_s_at--469--1771Chr06:31106574..31106598 (25 bp)
ACCTGTGGCAAAATGTAGAGCTCAA
LOC_Os06g51360
Os.7625.1.A1_s_at--497--3571Chr06:31106668..31106692 (25 bp)
CATACATGTATTCTTTACTCTGTTA
LOC_Os06g51360
Os.7625.1.A1_s_at--1138--5991Chr06:31106746..31106770 (25 bp)
GAGAGTTTACAGACAGAGGACCTAT
LOC_Os06g51360
Os.7625.1.A1_s_at--929--5631Chr06:31106757..31106781 (25 bp)
GACAGAGGACCTATATACGGAGTAT
LOC_Os06g51360
Os.7625.1.A1_s_at--871--8031Chr06:31106775..31106799 (25 bp)
GGAGTATATCCCATGCATTCTAATT
LOC_Os06g51360
Target Sequence 
TCGTTCACGCGACCATTGCTTGATGGCCTTCCGAAACCCACAGCACCTAGGAGGACCAAAGCTGCTTTGGATTGAGCTGC
CTGTGGCNGTAGTAGGTTTGTNCTGNCGATNGANCCAACTTNGAATTTGNCCAANGAAGNAANCCGGTNGGAAAATNGGA
AGTTGTGGNCTTGGCTTGTTTTNNCAGAGTTTTTATTTTGACGGNCAGTTGCACCCTTGACGNCCAGCGCTGCATTCTTC
ATCTTACCTGTGGCAAAATGTAGAGCTCAATACTTNTCAGTGCCATGGAAGNAAGCGGTGGTTCTGGCATAGAAACTCAT
ATATANTTGTATCNATATACATACATGTATTCTTTACTCTGTTATGTAGATGATGTGCTGGTATATAATTTAGTATAGAG
TTTTGAGAAAGAGAGCAGAGAGTTTACAGACAGAGGACCTATATACGGAGTATATCCCATGCATTCTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7625.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis