Browse Element(s) Details


OsAffx.28212.1.S1_at

Description tigr:9634.m05001
TID=OsAffx.28212.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serine carboxypeptidase II-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5137011/11Serine carboxypeptidase II precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51330OsAffx.5164.1.S1_at1/116+31082617..31092279BNR/Asp-box repeat family protein, expressed
LOC_Os06g51340OsAffx.29536.5.S1_x_at1/116+31096292..31098021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g51340OsAffx.28971.1.S1_at1/116+31096292..31098021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g51350OsAffx.5165.1.S1_at11/116+31099115..31101230tRNA isopentenyltransferase 9, putative, expressed
LOC_Os06g51360Os.7625.1.A1_s_at11/116+31104381..31106964LysM domain containing protein, expressed
LOC_Os06g51360OsAffx.28211.1.S1_at11/116+31104381..31106964LysM domain containing protein, expressed
LOC_Os06g51370OsAffx.28212.1.S1_at11/116+31108239..31110246Serine carboxypeptidase II precursor, putative
LOC_Os06g51380Os.38358.1.S1_x_at7/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51380Os.38358.1.S1_at6/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51380Os.10848.1.A1_x_at6/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51380Os.27044.1.A1_at1/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51390Os.11834.1.S1_at11/116+31126432..31129684expressed protein
LOC_Os06g51400Os.10478.1.S1_at11/116+31131894..31135053expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28212.1.S1_at--517--4491Chr06:31109714..31109738 (25 bp)
GCCGCTTCGCCGATAAGGTGCTCCG
LOC_Os06g51370
OsAffx.28212.1.S1_at--1027--4691Chr06:31109747..31109771 (25 bp)
GCGGCTTGCCTTACAACACGTACAA
LOC_Os06g51370
OsAffx.28212.1.S1_at--425--2191Chr06:31109759..31109783 (25 bp)
ACAACACGTACAACCCGTGCGTGGA
LOC_Os06g51370
OsAffx.28212.1.S1_at--69--7531Chr06:31109779..31109803 (25 bp)
GTGGACTACCGCGTGATCGACTACC
LOC_Os06g51370
OsAffx.28212.1.S1_at--680--491Chr06:31109794..31109818 (25 bp)
ATCGACTACCTGAACCGCGGCGACG
LOC_Os06g51370
OsAffx.28212.1.S1_at--679--9031Chr06:31109875..31109899 (25 bp)
TGCAGCGACGCGCTCACCAACTGGA
LOC_Os06g51370
OsAffx.28212.1.S1_at--1078--9291Chr06:31109954..31109978 (25 bp)
TCCGCGTCTGGGTCTTCAGCGGTGA
LOC_Os06g51370
OsAffx.28212.1.S1_at--559--8191Chr06:31110053..31110077 (25 bp)
GGAAGCAGTGGTTCACGAGCGATCA
LOC_Os06g51370
OsAffx.28212.1.S1_at--712--1051Chr06:31110077..31110101 (25 bp)
AGGTGGGCGGCTACACCGTGCTCTA
LOC_Os06g51370
OsAffx.28212.1.S1_at--695--2111Chr06:31110140..31110164 (25 bp)
ACATGGTTCCCATGATCACGCCTGT
LOC_Os06g51370
OsAffx.28212.1.S1_at--924--4471Chr06:31110159..31110183 (25 bp)
GCCTGTGCAGGCCAGACAGCTCTTC
LOC_Os06g51370
Target Sequence 
GCCGCTTCGCCGATAAGGTGCTCCGCCTCCGCCGCGGCTTGCCTTACAACACGTACAACCCGTGCGTGGACTACCGCGTG
ATCGACTACCTGAACCGCGGCGACGTCCAGGCGGCGCTCCACGCCAACGTGTCGGGCGGCATCCCCTACAGCTGGGCGCC
CTGCAGCGACGCGCTCACCAACTGGACGGACGCGCCGCCCTCCACGCTGCCGGACATCGCCGCCCTCGTCCGCGCCGGCC
TCCGCGTCTGGGTCTTCAGCGGTGACACGGACGACCGCGTGCCGGTGACGTCGACGAGGTACGCGCTGCGGAAGCTCAAG
CTCAAGACGGTGAGGCCGTGGAAGCAGTGGTTCACGAGCGATCAGGTGGGCGGCTACACCGTGCTCTACGACGGCCTCAC
CTTCGTCACCATCCGCGGCGCCGGCCACATGGTTCCCATGATCACGCCTGTGCAGGCCAGACAGCTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis