Browse Element(s) Details

Os.9263.1.S1_s_at

Description

gb:AK070316.1
DB_XREF= gi:32980340
TID=Os.9263.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052A16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052A16, full insert sequence.
FL= gb:AK070316.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51410	11/11	prolyl oligopeptidase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g51380	Os.38358.1.S1_x_at	7/11	6	+	31117749..31120975	root hairless 1, putative, expressed
LOC_Os06g51380	Os.38358.1.S1_at	6/11	6	+	31117749..31120975	root hairless 1, putative, expressed
LOC_Os06g51380	Os.10848.1.A1_x_at	6/11	6	+	31117749..31120975	root hairless 1, putative, expressed
LOC_Os06g51380	Os.27044.1.A1_at	1/11	6	+	31117749..31120975	root hairless 1, putative, expressed
LOC_Os06g51390	Os.11834.1.S1_at	11/11	6	+	31126432..31129684	expressed protein
LOC_Os06g51400	Os.10478.1.S1_at	11/11	6	+	31131894..31135053	expressed protein
LOC_Os06g51410	Os.9263.1.S1_s_at	11/11	6	+	31135694..31144707	prolyl oligopeptidase family protein, expressed
LOC_Os06g51410	Os.9263.1.S1_at	11/11	6	+	31135694..31144707	prolyl oligopeptidase family protein, expressed
LOC_Os06g51420	Os.53248.1.A1_at	11/11	6	+	31146959..31149547	coiled-coil domain containing 12, putative, expressed
LOC_Os06g51430	Os.51219.1.S1_at	11/11	6	+	31150350..31155613	signal peptide peptidase family protein, expressed
LOC_Os06g51440	Os.47871.1.S1_at	10/11	6	+	31156331..31157286	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g51450	OsAffx.16021.1.S1_at	11/11	6	+	31160734..31168410	PHD-finger family protein, expressed
LOC_Os06g51450	Os.5716.1.S1_at	11/11	6	+	31160734..31168410	PHD-finger family protein, expressed
LOC_Os06g51460	Os.23434.1.S1_at	11/11	6	+	31168672..31173839	ABC transporter family protein, putative, expressed
LOC_Os06g51460	Os.23434.1.S1_s_at	11/11	6	+	31168672..31173839	ABC transporter family protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006508	biological_process	proteolysis
GO:0004287	molecular_function	prolyl oligopeptidase activity
GO:0008236	molecular_function	serine-type peptidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9263.1.S1_s_at--1057--709	1	Chr06:31136028..31136383 (25 bp)	GTCACTGCTGGCTTAAATGATCCTC	LOC_Os06g51410
Os.9263.1.S1_s_at--950--257	1	Chr06:31136202..31136226 (25 bp)	AACGGATGACAATCTTCTGTTATTC	LOC_Os06g51410
Os.9263.1.S1_s_at--44--323	1	Chr06:31136178..31136202 (25 bp)	CAAGTGCGAACTTGGTGCTGGGCAC	LOC_Os06g51410
Os.9263.1.S1_s_at--179--909	1	Chr06:31136163..31136187 (25 bp)	TGCTGGGCACTTCTCAAAATCGGGA	LOC_Os06g51410
Os.9263.1.S1_s_at--1006--59	1	Chr06:31136017..31136041 (25 bp)	ATGCGTTTATCCTCAAGGCACTGGG	LOC_Os06g51410
Os.9263.1.S1_s_at--567--529	1	Chr06:31135993..31136017 (25 bp)	GAATGGCTCCAAAGGCAGCGTTGTA	LOC_Os06g51410
Os.9263.1.S1_s_at--444--337	1	Chr06:31135978..31136002 (25 bp)	CAGCGTTGTAAAAGAAAGCCCTTCT	LOC_Os06g51410
Os.9263.1.S1_s_at--521--165	1	Chr06:31135962..31135986 (25 bp)	AGCCCTTCTGTTCCGGGTTAAGATG	LOC_Os06g51410
Os.9263.1.S1_s_at--747--625	1	Chr06:31135941..31135965 (25 bp)	GATGGTGGCGGTTCTCAAGCATTGA	LOC_Os06g51410
Os.9263.1.S1_s_at--896--665	1	Chr06:31135864..31135888 (25 bp)	GTTGACATATTCGACTAAGGCCCTG	LOC_Os06g51410
Os.9263.1.S1_s_at--1049--337	1	Chr06:31135705..31135729 (25 bp)	CAGCCTAATTGATGCAAGTCAGTCA	LOC_Os06g51410

Target Sequence

GTCACTGCTGGCTTAAATGATCCTCGTGTGATGTACTCGGAACCGGCGAAATATGTCGCAAAGCTAAGGGAACTGAAAAC
GGATGACAATCTTCTGTTATTCAAGTGCGAACTTGGTGCTGGGCACTTCTCAAAATCGGGAAGGTTTGAGAAACTACGAG
AAGATGCGTTTACTTATGCGTTTATCCTCAAGGCACTGGGAATGGCTCCAAAGGCAGCGTTGTAAAAGAAAGCCCTTCTG
TTCCGGGTTAAGATGGTGGCGGTTCTCAAGCATTGATTGGCTGATTGTAGTAAAACTTAACTTGAGTCGATCGGTTGTGT
TGTGTTGTGTTGACATATTCGACTAAGGCCCTGTTTAGATTTCAACTTTTTTCTTTAAACTTCCAACTTTCCGTCACATC
GAACTTTTCTACACACACAAACTTTCAACTTTTCTGTCACATCGTTTCAATTTCTTCAAACTTACAATTTTGGCGTGGAA
CTAAANANCAGCCTAATTGATGCAAGTCAGTCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis