Browse Element(s) Details


Os.5716.1.S1_at

Description gb:AU172691
DB_XREF= gi:12622478
DB_XREF=AU172691
CLONE=E10111
TID=Os.5716.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5716 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5145011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51410Os.9263.1.S1_s_at11/116+31135694..31144707prolyl oligopeptidase family protein, expressed
LOC_Os06g51410Os.9263.1.S1_at11/116+31135694..31144707prolyl oligopeptidase family protein, expressed
LOC_Os06g51420Os.53248.1.A1_at11/116+31146959..31149547coiled-coil domain containing 12, putative, expressed
LOC_Os06g51430Os.51219.1.S1_at11/116+31150350..31155613signal peptide peptidase family protein, expressed
LOC_Os06g51440Os.47871.1.S1_at10/116+31156331..31157286transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g51450OsAffx.16021.1.S1_at11/116+31160734..31168410PHD-finger family protein, expressed
LOC_Os06g51450Os.5716.1.S1_at11/116+31160734..31168410PHD-finger family protein, expressed
LOC_Os06g51460Os.23434.1.S1_at11/116+31168672..31173839ABC transporter family protein, putative, expressed
LOC_Os06g51460Os.23434.1.S1_s_at11/116+31168672..31173839ABC transporter family protein, putative, expressed
LOC_Os06g51470OsAffx.16018.1.S1_at11/116+31178205..31178814expressed protein
LOC_Os06g51480Os.9174.1.S1_a_at11/116+31180672..31183728expressed protein
LOC_Os06g51480Os.9174.1.S1_at11/116+31180672..31183728expressed protein
LOC_Os06g51480Os.9174.2.S1_x_at11/116+31180672..31183728expressed protein
LOC_Os06g51490Os.15074.1.S1_at11/116+31183920..31186614PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5716.1.S1_at--1021--2232Chr06:29161759..29162169 (25 bp)
AAATTGGATGGCTAGCTCTGTGAAT
NONE
Os.5716.1.S1_at--395--8311Chr06:31161052..31161076 (25 bp)
GGCTAGCTCTGTGAATATATGCATT
LOC_Os06g51450
Os.5716.1.S1_at--460--5871Chr06:31161015..31161039 (25 bp)
GAGCGTTGAGGCAGGTCCTTGCCAC
LOC_Os06g51450
Os.5716.1.S1_at--188--9251Chr06:31161000..31161024 (25 bp)
TCCTTGCCACCCTGATATGAAGCGT
LOC_Os06g51450
Os.5716.1.S1_at--736--4191Chr06:31160991..31161015 (25 bp)
CCCTGATATGAAGCGTGGTGAAGAT
LOC_Os06g51450
Os.5716.1.S1_at--694--3691Chr06:31160943..31160967 (25 bp)
CTAAGATAAAAAATCCCTTCTGTGA
LOC_Os06g51450
Os.5716.1.S1_at--1050--3871Chr06:31160924..31160948 (25 bp)
CTGTGAAAATTAATGGGTGCGTCCC
LOC_Os06g51450
Os.5716.1.S1_at--228--811Chr06:31160912..31160936 (25 bp)
ATGGGTGCGTCCCTTTTTGATATTT
LOC_Os06g51450
Os.5716.1.S1_at--1104--2071Chr06:31160824..31160848 (25 bp)
ACATTTGCGGCAGGAGTTGTCTGAT
LOC_Os06g51450
Os.5716.1.S1_at--675--7471Chr06:31160788..31160812 (25 bp)
GTGTGGTTAGTCTAGCTAGCTATTC
LOC_Os06g51450
Os.5716.1.S1_at--544--4871Chr06:31160770..31160794 (25 bp)
GCTATTCATCATACTTCATGCAGTT
LOC_Os06g51450
Target Sequence 
AAATTGGATGGCTAGCTCTGTGAATATATGCATTGGAATGTGCAGGGAGCGTTGAGGCAGGTCCTTGCCACCCTGATATG
AAGCGTGGTGAAGATAGGGACGGGACGGGACGGGAACCCTAAGATAAAAAATCCCTTCTGTGAAAATTAATGGGTGCGTC
CCTTTTTGATATTTTTTATTTGTCAGTGGTGGAAAAGAATATCGGGAGGATGTGTTTTCTTGTTTGTTTGTTTTTTTACA
TTTGCGGCAGGAGTTGTCTGATGTCGTGTGAGTGTGTGGTTAGTCTAGCTAGCTATTCATCATACTTCATGCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis