Browse Element(s) Details


Os.9174.2.S1_x_at

Description gb:AK065285.1
DB_XREF= gi:32975303
TID=Os.9174.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9174 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093C17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002M13, full insert sequence.
FL= gb:AK065285.1 gb:AK098979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5148011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51440Os.47871.1.S1_at10/116+31156331..31157286transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g51450OsAffx.16021.1.S1_at11/116+31160734..31168410PHD-finger family protein, expressed
LOC_Os06g51450Os.5716.1.S1_at11/116+31160734..31168410PHD-finger family protein, expressed
LOC_Os06g51460Os.23434.1.S1_at11/116+31168672..31173839ABC transporter family protein, putative, expressed
LOC_Os06g51460Os.23434.1.S1_s_at11/116+31168672..31173839ABC transporter family protein, putative, expressed
LOC_Os06g51470OsAffx.16018.1.S1_at11/116+31178205..31178814expressed protein
LOC_Os06g51480Os.9174.1.S1_a_at11/116+31180672..31183728expressed protein
LOC_Os06g51480Os.9174.1.S1_at11/116+31180672..31183728expressed protein
LOC_Os06g51480Os.9174.2.S1_x_at11/116+31180672..31183728expressed protein
LOC_Os06g51490Os.15074.1.S1_at11/116+31183920..31186614PHD-finger family protein, expressed
LOC_Os06g51500OsAffx.5166.1.S1_at11/116+31203001..31205774expressed protein
LOC_Os06g51510Os.7937.1.S1_s_at11/116+31207369..31210394expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046786biological_processviral replication complex formation and maintenance
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9174.2.S1_x_at--1141--2171Chr06:31181619..31181643 (25 bp)
ACACAGGCACTTTCACTTCTCCTGG
LOC_Os06g51480
Os.9174.2.S1_x_at--538--1731Chr06:31181646..31181670 (25 bp)
ACCATCTTACGATCCATGCTTTCTA
LOC_Os06g51480
Os.9174.2.S1_x_at--863--4191Chr06:31181672..31181696 (25 bp)
CCCGAGTGCCGACTATGACAGTGAT
LOC_Os06g51480
Os.9174.2.S1_x_at--834--2911Chr06:31181714..31181738 (25 bp)
AAGGAGGCCACTTCTGGTTGCCCAA
LOC_Os06g51480
Os.9174.2.S1_x_at--892--1771Chr06:31181763..31181787 (25 bp)
ACCGCCGATACTAGAGGTTTCCATC
LOC_Os06g51480
Os.9174.2.S1_x_at--958--1711Chr06:31182963..31182987 (25 bp)
ACCACCTCAGTAAGCAGCGTGTGAC
LOC_Os06g51480
Os.9174.2.S1_x_at--953--5371Chr06:31183010..31183034 (25 bp)
GAAGAAGCATGCCTTTGTCCCAAAC
LOC_Os06g51480
Os.9174.2.S1_x_at--881--3571Chr06:31183103..31183127 (25 bp)
CATTTTATGCCCTCTGGATTGTACA
LOC_Os06g51480
Os.9174.2.S1_x_at--934--7731Chr06:31183194..31183218 (25 bp)
GGTGGTACATGTTGGAGCTCTGCAT
LOC_Os06g51480
Os.9174.2.S1_x_at--984--8071Chr06:31183207..31183231 (25 bp)
GGAGCTCTGCATCTGTACAAGTGTA
LOC_Os06g51480
Os.9174.2.S1_x_at--665--7651Chr06:31183266..31183290 (25 bp)
GGGAGTATCTCTTCTTTCTACAAGA
LOC_Os06g51480
Target Sequence 
ACACAGGCACTTTCACTTCTCCTGGCNAACCATCTTACGATCCATGCTTTCTACCCCGAGTGCCGACTATGACAGTGATG
AAGATTTTGTGGTCATAAGGAGGCCACTTCTGGTTGCCCAAGGTGCTCCCGCTTATCTTCCTACCACCGCCGATACTAGA
GGTTTCCATCCAGNCCTATGGAGCTCAAGAATGAGACACAAGTATGGATTGAACTCAAGCAACTACACCTACAACACACT
GGATCCAAATGCACCACCACCTCAGTAAGCAGCGTGTGACTGATGATGATGTTAGAGATGATGAAGAAGCATGCCTTTGT
CCCAAACACCTAGTATATACAAACACCATTTCTTCTAATATTGTACTATCATTGTTTGCATGGTTAGTAATTTTTCATTT
TATGCCCTCTGGATTGTACATAGTTGCATATTTCATTGCATTTTAGTACTTTCATCAGTTGATATCTGCACATTTGTGTT
TATGTGGGTGGTACATGTTGGAGCTCTGCATCTGTACAAGTGTATTTGTGCATGANGGTGCAACATTGTTTAATAGTTGG
GAGTATCTCTTCTTTCTACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9174.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis