Browse Element(s) Details


OsAffx.5166.1.S1_at

Description tigr:9634.m05016
TID=OsAffx.5166.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5150011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51470OsAffx.16018.1.S1_at11/116+31178205..31178814expressed protein
LOC_Os06g51480Os.9174.1.S1_a_at11/116+31180672..31183728expressed protein
LOC_Os06g51480Os.9174.1.S1_at11/116+31180672..31183728expressed protein
LOC_Os06g51480Os.9174.2.S1_x_at11/116+31180672..31183728expressed protein
LOC_Os06g51490Os.15074.1.S1_at11/116+31183920..31186614PHD-finger family protein, expressed
LOC_Os06g51500OsAffx.5166.1.S1_at11/116+31203001..31205774expressed protein
LOC_Os06g51510Os.7937.1.S1_s_at11/116+31207369..31210394expressed protein
LOC_Os06g51520Os.49118.1.S1_at11/116+31211405..31216520lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os06g51530OsAffx.28214.1.S1_at8/116+31222503..31225588ribosomal protein L29 containing protein
LOC_Os06g51530Os.19501.2.S1_x_at1/116+31222503..31225588ribosomal protein L29 containing protein
LOC_Os06g51540NANA6+31227111..31230939Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5166.1.S1_at--1139--5491Chr06:31204459..31204483 (25 bp)
GAACACCTACCTACTCCATGGAGAG
LOC_Os06g51500
OsAffx.5166.1.S1_at--771--1571Chr06:31204436..31204460 (25 bp)
AGCTCAAGCTCAAGGTTAGTCGCGA
LOC_Os06g51500
OsAffx.5166.1.S1_at--220--8911Chr06:31204409..31204433 (25 bp)
TGAGAACACTCTTGGCCAATACCGG
LOC_Os06g51500
OsAffx.5166.1.S1_at--1150--2391Chr06:31204315..31204339 (25 bp)
AAACATTTCGTCTGCCTTAGTTGAT
LOC_Os06g51500
OsAffx.5166.1.S1_at--474--5971Chr06:31204252..31204276 (25 bp)
GAGAAGCTATCGGATGGCCCTATCG
LOC_Os06g51500
OsAffx.5166.1.S1_at--788--6571Chr06:31204224..31204248 (25 bp)
GATTCTGGTGACGTCAAGGCACTGT
LOC_Os06g51500
OsAffx.5166.1.S1_at--410--7631Chr06:31204192..31204216 (25 bp)
GGGACTAGCACTTATCTTTCGTGCC
LOC_Os06g51500
OsAffx.5166.1.S1_at--596--1571Chr06:31204167..31204190 (24 bp)
AGCTACTTGCTGATATCGGACCGGA
LOC_Os06g51500
OsAffx.5166.1.S1_at--215--4751Chr06:31203698..31203722 (25 bp)
GCTGACCGAGTTTATTTGGCTGCAA
LOC_Os06g51500
OsAffx.5166.1.S1_at--1162--251Chr06:31203430..31203660 (25 bp)
ATATGCTCCGGAAGCTCTCTACAGA
LOC_Os06g51500
OsAffx.5166.1.S1_at--1133--6351Chr06:31203383..31203407 (25 bp)
GATCCTATCTCCGTTCTGGAAACAA
LOC_Os06g51500
Target Sequence 
GAACACCTACCTACTCCATGGAGAGCTCAAGCTCAAGGTTAGTCGCGAGCTGAGAACACTCTTGGCCAATACCGGTGCTC
TTCTAAATGGAAGAGACCGCGTCTCACGGTCCAGGAAGCTGGACAGAAGAATCTTAAGCAGAGAAAACATTTCGTCTGCC
TTAGTTGATGTTTGTGAAGAGTGTGAAAGCCTTCTTGTTGAGGCTGGGAGAAGCTATCGGATGGCCCTATCGATTGATTC
TGGTGACGTCAAGGCACTGTACAATTGGGGACTAGCACTTATCTTTCGTGCCCAGCTACTTGCTGATATCGGACCGGAAG
CAGCAATTGATGCTGACCGAGTTTATTTGGCTGCAATCGATAAATTTGATGCGATGTTGTCCAAAAGCAACACATATGCT
CCGGAAGCTCTCTACAGATGGGGCATTGCACTGCAGCAGCGATCCTATCTCCGTTCTGGAAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis