Browse Element(s) Details


Os.19501.2.S1_x_at

Description gb:AK066214.1
DB_XREF= gi:32976232
TID=Os.19501.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056C13, full insert sequence.
FL= gb:AK066214.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g515301/11ribosomal protein L29 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51500OsAffx.5166.1.S1_at11/116+31203001..31205774expressed protein
LOC_Os06g51510Os.7937.1.S1_s_at11/116+31207369..31210394expressed protein
LOC_Os06g51520Os.49118.1.S1_at11/116+31211405..31216520lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os06g51530OsAffx.28214.1.S1_at8/116+31222503..31225588ribosomal protein L29 containing protein
LOC_Os06g51530Os.19501.2.S1_x_at1/116+31222503..31225588ribosomal protein L29 containing protein
LOC_Os06g51540NANA6+31227111..31230939Transposable element protein, putative, Retrotrans_gag
LOC_Os06g51550Os.50780.1.S1_at1/116+31234133..31236941retrotransposon protein, putative, unclassified
LOC_Os06g51560NANA6+31238408..31238980hypothetical protein
LOC_Os06g51570NANA6+31241709..31242608retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19501.2.S1_x_at--102--3091Chr12:12834610..12834634 (25 bp)
AATCAAAGTCTCCATGCGCATGTGC
NONE
Os.19501.2.S1_x_at--761--4991Chr12:12834627..12834651 (25 bp)
GCATGTGCATGCTGGTAACCTCTAC
NONE
Os.19501.2.S1_x_at--846--7831Chr12:12834640..12834664 (25 bp)
GGTAACCTCTACCACTATGTGCATA
NONE
Os.19501.2.S1_x_at--181--9531Chr12:12834679..12834703 (25 bp)
TTTACTTTTGCCACTTGAAACCTAT
NONE
Os.19501.2.S1_x_at--493--10432Chr12:12834838..12834862 (25 bp)
TTATGATCTACGCACCTACTTGAAG
NONE
Os.19501.2.S1_x_at--763--6892Chr12:12835815..12835839 (25 bp)
GTATCATCACAGAGGCGGTCTTTCT
NONE
Os.19501.2.S1_x_at--907--7811Chr12:12835831..12835855 (25 bp)
GGTCTTTCTTAGTCTTCAATATTTT
NONE
Os.19501.2.S1_x_at--238--5152Chr12:12835896..12835920 (25 bp)
GCAACAATGCCATCTCTTCAGTTAT
NONE
Os.19501.2.S1_x_at--859--4991Chr12:12835934..12835958 (25 bp)
GCATGGACACAACCTTTTGTCTTTG
NONE
Os.19501.2.S1_x_at--317--1231Chr12:12836013..12836037 (25 bp)
AGTTCTTATCTCATGTTCCTTATTC
NONE
Os.19501.2.S1_x_at--910--691NONE
ATGAGAGCTCTTGCAGTTGTTTTTG
NONE
Target Sequence 
AATCAAAGTCTCCATGCGCATGTGCATGCTGGTAACCTCTACCACTATGTGCATACATAATAAATTAAATTTACTTTTGC
CACTTGAAACCTATAAACACAGGCAACTATTTTTTTTCTTTTTCATTTCCAAAGGTTTGTTTCAGTGTTAACCTTGGTAT
TTTTTTTCCTATCAAACTATCCAAGCTGAATGAGTGCAAGGATATTTTTGAGGCTTTGTACAAATTATTTATGATCTACG
CACCTACTTGAAGCCACATGTTGAAATTAATATATTGATGTTGTATCATCACAGAGGCGGTCTTTCTTAGTCTTCAATAT
TTTCTTAGAGCTAAACGGTTATATTTTTTTTGGTGTCTACTTAGCAACAATGCCATCTCTTCAGTTATTGCAACTGACAG
AGCATGGACACAACCTTTTGTCTTTGAGAAGGTGTGCTGTTTTAACATTATATTTCTAAATTTTAGTAAGCCGATCATTT
AGTTCTTATCTCATGTTCCTTATTCTTTACAAATATCAACATGAGAGCTCTTGCAGTTGTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19501.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis