Browse Element(s) Details


Os.49118.1.S1_at

Description gb:AK064258.1
DB_XREF= gi:32974276
TID=Os.49118.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-D01, full insert sequence.
FL= gb:AK064258.1 gb:AK073333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5152011/11lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51490Os.15074.1.S1_at11/116+31183920..31186614PHD-finger family protein, expressed
LOC_Os06g51500OsAffx.5166.1.S1_at11/116+31203001..31205774expressed protein
LOC_Os06g51510Os.7937.1.S1_s_at11/116+31207369..31210394expressed protein
LOC_Os06g51520Os.49118.1.S1_at11/116+31211405..31216520lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os06g51530OsAffx.28214.1.S1_at8/116+31222503..31225588ribosomal protein L29 containing protein
LOC_Os06g51530Os.19501.2.S1_x_at1/116+31222503..31225588ribosomal protein L29 containing protein
LOC_Os06g51540NANA6+31227111..31230939Transposable element protein, putative, Retrotrans_gag
LOC_Os06g51550Os.50780.1.S1_at1/116+31234133..31236941retrotransposon protein, putative, unclassified
LOC_Os06g51560NANA6+31238408..31238980hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49118.1.S1_at--786--5231Chr06:31215400..31215424 (25 bp)
GAATACCATCGTTAGGAGGACCATC
LOC_Os06g51520
Os.49118.1.S1_at--326--9791Chr06:31215427..31215920 (25 bp)
TAAGCAGTAAGACCCCTCGGAGATC
LOC_Os06g51520
Os.49118.1.S1_at--943--1271Chr06:31215916..31215939 (24 bp)
AGATCTCTGGATTTACGGACCCACA
LOC_Os06g51520
Os.49118.1.S1_at--452--3191Chr06:31216042..31216066 (25 bp)
CAATCGTCTGCTGAGCTGGAGAAGT
LOC_Os06g51520
Os.49118.1.S1_at--89--1671Chr06:31216189..31216213 (25 bp)
AGCCCACCTCACATTAGAGTTGCAG
LOC_Os06g51520
Os.49118.1.S1_at--338--5011Chr06:31216210..31216234 (25 bp)
GCAGGACAGTCCACATCGATTACAA
LOC_Os06g51520
Os.49118.1.S1_at--1143--3491Chr06:31216258..31216282 (25 bp)
CATGGCAATCTGTGGGCTTCATAGT
LOC_Os06g51520
Os.49118.1.S1_at--886--5671Chr06:31216298..31216322 (25 bp)
GACATTTATCTGACTAGCGTTCACC
LOC_Os06g51520
Os.49118.1.S1_at--344--1631Chr06:31216313..31216337 (25 bp)
AGCGTTCACCATTATGTCCTCAAGA
LOC_Os06g51520
Os.49118.1.S1_at--1126--5851Chr06:31216344..31216368 (25 bp)
GAGCCACTGGATACGGTACCATCAA
LOC_Os06g51520
Os.49118.1.S1_at--525--5451Chr06:31216390..31216414 (25 bp)
GAACGGCAACCCAAACTAACCAGAG
LOC_Os06g51520
Target Sequence 
GAATACCATCGTTAGGAGGACCATCACTAAGCAGTAAGACCCCTCGGAGATCTCTGGATTTACGGACCCACATTAGAAGA
CAATCGTCTGCTGAGCTGGAGAAGTTTAAAGAGCGCTGGAACAGAGCTGTAAGGGAAGATGAAGAATGGACAGATCCTTT
TGATACTTGATTACTTTGAAAGAAGAATCCGATACAAATATACAAGCCCACCTGATACAAATATACAAGCCCACCTCACA
TTAGAGTTGCAGGACAGTCCACATCGATTACAATAATTGGACTCGAGATCATCTCACATGGCAATCTGTGGGCTTCATAG
TAAACGGTTTGTTACAGACATTTATCTGACTAGCGTTCACCATTATGTCCTCAAGAGGTGAAGAGCCACTGGATACGGTA
CCATCAACACAAGGATCAAGGNGCAACTGAACGGCAACCCAAACTAACCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis