Browse Element(s) Details


OsAffx.28214.1.S1_at

Description tigr:9634.m05020
TID=OsAffx.28214.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY086291 putative 60S ribosomal protein L35
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g515308/11ribosomal protein L29 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51500OsAffx.5166.1.S1_at11/116+31203001..31205774expressed protein
LOC_Os06g51510Os.7937.1.S1_s_at11/116+31207369..31210394expressed protein
LOC_Os06g51520Os.49118.1.S1_at11/116+31211405..31216520lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os06g51530OsAffx.28214.1.S1_at8/116+31222503..31225588ribosomal protein L29 containing protein
LOC_Os06g51530Os.19501.2.S1_x_at1/116+31222503..31225588ribosomal protein L29 containing protein
LOC_Os06g51540NANA6+31227111..31230939Transposable element protein, putative, Retrotrans_gag
LOC_Os06g51550Os.50780.1.S1_at1/116+31234133..31236941retrotransposon protein, putative, unclassified
LOC_Os06g51560NANA6+31238408..31238980hypothetical protein
LOC_Os06g51570NANA6+31241709..31242608retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28214.1.S1_at--798--2691NONE
AAGCTCTCCAATATCAAGGTGAGGA
NONE
OsAffx.28214.1.S1_at--543--9211NONE
TCCAATATCAAGGTGAGGACGGCGC
NONE
OsAffx.28214.1.S1_at--457--4531Chr06:31224772..31224792 (21 bp)
GCCGCCTCACGAAGCACCAGGGAAT
LOC_Os06g51530
OsAffx.28214.1.S1_at--853--4451NONE
GCCTCACGAAGCACCAGGGAATGCT
NONE
OsAffx.28214.1.S1_at--455--10331Chr06:31223656..31223680 (25 bp)
TTTAGAAACGGGACTATTGTGTGTG
LOC_Os06g51530
OsAffx.28214.1.S1_at--749--7471Chr06:31223535..31223662 (25 bp)
GTGTGTGAGGTAACCCAGCAGCACT
LOC_Os06g51530
OsAffx.28214.1.S1_at--451--5111Chr06:31223515..31223539 (25 bp)
GCACTGCCACAGCAAGTCAGCATGT
LOC_Os06g51530
OsAffx.28214.1.S1_at--741--6291Chr06:31223059..31223511 (25 bp)
GATGAAGACCTTATTGGTCCAGTTT
LOC_Os06g51530
OsAffx.28214.1.S1_at--1014--7771Chr06:31223044..31223068 (25 bp)
GGTCCAGTTTCAGAGGATGATGATC
LOC_Os06g51530
OsAffx.28214.1.S1_at--858--6271Chr06:31223026..31223050 (25 bp)
GATGATCAATTTACAGAAGGTTTTG
LOC_Os06g51530
OsAffx.28214.1.S1_at--566--11Chr06:31223012..31223036 (25 bp)
AGAAGGTTTTGACAGGTTACCTCAT
LOC_Os06g51530
Target Sequence 
AAGCTCTCCAATATCAAGGTGAGGACGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGAAGAGCCTCCTCCCACTCGACCT
CCGCCCCAAGAAAACCTGCGCCATCCGCCGCCGCCTCACGAAGCACCAGGGAATGCTTCTGTTTCTGATTGGTGATGATC
CACAGAAGAGGCCGTACAGCAAGGCATCTCAAGCTCTGTTTTCTGATATTGAGCATGGCTGCTTGCCTCAAGTCGTCTTG
GGCGACGTGCCTTGCAAATTTAGAAACGGGACTATTGTGTGTGAGGTAACCCAGCAGCACTGCCACAGCAAGTCAGCATG
TGGGGATGAAGACCTTATTGGTCCAGTTTCAGAGGATGATGATCAATTTACAGAAGGTTTTGACAGGTTACCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis