Browse Element(s) Details


OsAffx.16018.1.S1_at

Description tigr:9634.m05013
TID=OsAffx.16018.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5147011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51430Os.51219.1.S1_at11/116+31150350..31155613signal peptide peptidase family protein, expressed
LOC_Os06g51440Os.47871.1.S1_at10/116+31156331..31157286transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g51450OsAffx.16021.1.S1_at11/116+31160734..31168410PHD-finger family protein, expressed
LOC_Os06g51450Os.5716.1.S1_at11/116+31160734..31168410PHD-finger family protein, expressed
LOC_Os06g51460Os.23434.1.S1_at11/116+31168672..31173839ABC transporter family protein, putative, expressed
LOC_Os06g51460Os.23434.1.S1_s_at11/116+31168672..31173839ABC transporter family protein, putative, expressed
LOC_Os06g51470OsAffx.16018.1.S1_at11/116+31178205..31178814expressed protein
LOC_Os06g51480Os.9174.1.S1_a_at11/116+31180672..31183728expressed protein
LOC_Os06g51480Os.9174.1.S1_at11/116+31180672..31183728expressed protein
LOC_Os06g51480Os.9174.2.S1_x_at11/116+31180672..31183728expressed protein
LOC_Os06g51490Os.15074.1.S1_at11/116+31183920..31186614PHD-finger family protein, expressed
LOC_Os06g51500OsAffx.5166.1.S1_at11/116+31203001..31205774expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16018.1.S1_at--678--10391Chr06:31178754..31178778 (25 bp)
TTTTCCAGGCAAATGCTTCCTCCTC
LOC_Os06g51470
OsAffx.16018.1.S1_at--729--2451Chr06:31178725..31178749 (25 bp)
AACAAGTACCCAAGCCATCGGCGGC
LOC_Os06g51470
OsAffx.16018.1.S1_at--537--5051Chr06:31178693..31178717 (25 bp)
GCAGCTCACCCATTACTACTAGGAC
LOC_Os06g51470
OsAffx.16018.1.S1_at--627--131Chr06:31178682..31178706 (25 bp)
ATTACTACTAGGACGCCGTCGGCTG
LOC_Os06g51470
OsAffx.16018.1.S1_at--899--9351Chr06:31178602..31178626 (25 bp)
TCGCAGCCAGCTTGCTAGTGGGCAG
LOC_Os06g51470
OsAffx.16018.1.S1_at--1150--951Chr06:31178533..31178557 (25 bp)
AGGAGTGCTCGGAGTGCGGCGGGAC
LOC_Os06g51470
OsAffx.16018.1.S1_at--951--7591Chr06:31178485..31178509 (25 bp)
GGGAAGGGTTCGTGTTCAAGCAGCT
LOC_Os06g51470
OsAffx.16018.1.S1_at--671--1431Chr06:31178422..31178446 (25 bp)
AGAACATGGCCACCAGATACACTTC
LOC_Os06g51470
OsAffx.16018.1.S1_at--6--8431Chr06:31178418..31178439 (22 bp)
GGCCACCAGATACACTTCCGGGCTG
LOC_Os06g51470
OsAffx.16018.1.S1_at--381--7571Chr06:31178297..31178320 (24 bp)
GGGCTGCCCACCAAGTGGACCTACT
LOC_Os06g51470
OsAffx.16018.1.S1_at--569--2871Chr06:31178285..31178309 (25 bp)
AAGTGGACCTACTGCAACCGCTGCT
LOC_Os06g51470
Target Sequence 
TTTTCCAGGCAAATGCTTCCTCCTCCTCCAACAAGTACCCAAGCCATCGGCGGCGCTGGCCGCAGCTCACCCATTACTAC
TAGGACGCCGTCGGCTGGCTGCCCTCCCGGAGACGGCCGCAGCGTGCGTGGCCGCCGCGGGGTTGGTGGGAGTCGCAGCC
AGCTTGCTAGTGGGCAGGGCGGCGGAAGGAGCACGACGAGAAGAGGAAGAGGAGGAGGAGGAGGAGTGCTCGGAGTGCGG
CGGGACGGGGCTGTGCCCGCGGTGCAAAGGGGAAGGGTTCGTGTTCAAGCAGCTGCCGGAGGAGGCGGCCAGCAGGGCCC
GGAAGGCGGCCAAGAACATGGCCACCAGATACACTTCCGGGCTGCCCACCAAGTGGACCTACTGCAACCGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis