Browse Element(s) Details


Os.51219.1.S1_at

Description gb:AK064963.1
DB_XREF= gi:32974981
TID=Os.51219.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001A18, full insert sequence.
FL= gb:AK064963.1 gb:AK099361.1 gb:AK065172.1 gb:AK062118.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5143011/11signal peptide peptidase family protein, expressed
LOC_Os02g492601/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51390Os.11834.1.S1_at11/116+31126432..31129684expressed protein
LOC_Os06g51400Os.10478.1.S1_at11/116+31131894..31135053expressed protein
LOC_Os06g51410Os.9263.1.S1_s_at11/116+31135694..31144707prolyl oligopeptidase family protein, expressed
LOC_Os06g51410Os.9263.1.S1_at11/116+31135694..31144707prolyl oligopeptidase family protein, expressed
LOC_Os06g51420Os.53248.1.A1_at11/116+31146959..31149547coiled-coil domain containing 12, putative, expressed
LOC_Os06g51430Os.51219.1.S1_at11/116+31150350..31155613signal peptide peptidase family protein, expressed
LOC_Os06g51440Os.47871.1.S1_at10/116+31156331..31157286transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g51450OsAffx.16021.1.S1_at11/116+31160734..31168410PHD-finger family protein, expressed
LOC_Os06g51450Os.5716.1.S1_at11/116+31160734..31168410PHD-finger family protein, expressed
LOC_Os06g51460Os.23434.1.S1_at11/116+31168672..31173839ABC transporter family protein, putative, expressed
LOC_Os06g51460Os.23434.1.S1_s_at11/116+31168672..31173839ABC transporter family protein, putative, expressed
LOC_Os06g51470OsAffx.16018.1.S1_at11/116+31178205..31178814expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016020cellular_componentmembrane
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51219.1.S1_at--494--31Chr06:31154678..31154702 (25 bp)
ATTGGATTCGGTGACATCCTTCTAC
LOC_Os06g51430
Os.51219.1.S1_at--516--1771Chr06:31154701..31154725 (25 bp)
ACCTGGGCTGTTAGTTGCATTTGCA
LOC_Os06g51430
Os.51219.1.S1_at--664--2971Chr06:31154893..31154913 (21 bp)
AATGGTGGCCTATGGTTCTGGACTC
LOC_Os06g51430
Os.51219.1.S1_at--410--10211Chr06:31155066..31155090 (25 bp)
TATTACATATGTCGCCTTGAACCTT
LOC_Os06g51430
Os.51219.1.S1_at--179--10431Chr06:31155089..31155113 (25 bp)
TTATGGACGGACATGGCCAACCTGC
LOC_Os06g51430
Os.51219.1.S1_at--676--1351Chr06:31155292..31155316 (25 bp)
AGAGAGTATGCCCTCATCACATGCA
LOC_Os06g51430
Os.51219.1.S1_at--1086--1131Chr06:31155347..31155371 (25 bp)
AGTCCAGTAGATCCGTCATCTTGTT
LOC_Os06g51430
Os.51219.1.S1_at--254--10451Chr06:31155374..31155398 (25 bp)
TTAGTACTGTAGCTATCCGTCACCA
LOC_Os06g51430
Os.51219.1.S1_at--1104--3531Chr06:31155403..31155427 (25 bp)
CATCCGTTTGCCTAAGCGAGCTTAA
LOC_Os06g51430
Os.51219.1.S1_at--1114--2412Chr06:31155434..31155458 (25 bp)
AAAAAATCGTCTCCTGCATGTTCTT
LOC_Os06g51430
Os.51219.1.S1_at--738--9391Chr06:31155489..31155513 (25 bp)
TCGTTTGCTGCTTCTCTATAGTGAA
LOC_Os06g51430
Target Sequence 
ATTGGATTCGGTGACATCCTTCTACCTGGGCTGTTAGTTGCATTTGCATTAAGATATGATTGGGCTGCCAAGAAAAGCTT
GCAAACTGGTTACTTTTTGTGGTCAATGGTGGCCTATGGTTCTGGACTCCTTATTACATATGTCGCCTTGAACCTTATGG
ACGGACATGGCCAACCTGCACTTCTCTACATAGTGCCCTTCACACTTGGTGCGCTGATATCACTTGGGTGGAAAAGAGGA
GAACTGTGGAACCTATGGTCCAAAGGGGAGCCAGAGAGAGTATGCCCTCATCACATGCATATGCAGCCTCAGCCGAAGAC
GCCCCCACTAGTCCAGTAGATCCGTCATCTTGTTAATTAGTACTGTAGCTATCCGTCACCAGCTGCATCCGTTTGCCTAA
GCGAGCTTAATGGTGTAAAAAATCGTCTCCTGCATGTTCTTAATTAGTAAGTATTAATCTCAATGAGTTGGTCGTTTGCT
GCTTCTCTATAGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis