Browse Element(s) Details

Os.47871.1.S1_at

Description

gb:CK665010
DB_XREF= gi:42414370
DB_XREF=00210043081.A11_01102413EJ.scf
CLONE=00210043081.A11_01102413EJ.scf
TID=Os.47871.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47871 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51440	10/11	transposon protein, putative, CACTA, En/Spm sub-class, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g51400	Os.10478.1.S1_at	11/11	6	+	31131894..31135053	expressed protein
LOC_Os06g51410	Os.9263.1.S1_s_at	11/11	6	+	31135694..31144707	prolyl oligopeptidase family protein, expressed
LOC_Os06g51410	Os.9263.1.S1_at	11/11	6	+	31135694..31144707	prolyl oligopeptidase family protein, expressed
LOC_Os06g51420	Os.53248.1.A1_at	11/11	6	+	31146959..31149547	coiled-coil domain containing 12, putative, expressed
LOC_Os06g51430	Os.51219.1.S1_at	11/11	6	+	31150350..31155613	signal peptide peptidase family protein, expressed
LOC_Os06g51440	Os.47871.1.S1_at	10/11	6	+	31156331..31157286	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g51450	OsAffx.16021.1.S1_at	11/11	6	+	31160734..31168410	PHD-finger family protein, expressed
LOC_Os06g51450	Os.5716.1.S1_at	11/11	6	+	31160734..31168410	PHD-finger family protein, expressed
LOC_Os06g51460	Os.23434.1.S1_at	11/11	6	+	31168672..31173839	ABC transporter family protein, putative, expressed
LOC_Os06g51460	Os.23434.1.S1_s_at	11/11	6	+	31168672..31173839	ABC transporter family protein, putative, expressed
LOC_Os06g51470	OsAffx.16018.1.S1_at	11/11	6	+	31178205..31178814	expressed protein
LOC_Os06g51480	Os.9174.1.S1_a_at	11/11	6	+	31180672..31183728	expressed protein
LOC_Os06g51480	Os.9174.1.S1_at	11/11	6	+	31180672..31183728	expressed protein
LOC_Os06g51480	Os.9174.2.S1_x_at	11/11	6	+	31180672..31183728	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.47871.1.S1_at--13--845	1	Chr06:31157062..31157086 (25 bp)	TGGCCATTAAATATCATTACTACAT	LOC_Os06g51440
Os.47871.1.S1_at--85--547	1	Chr06:31157109..31157133 (25 bp)	TAAGTAAAGTTGTTAGTGCTAATGA	LOC_Os06g51440
Os.47871.1.S1_at--764--625	1	Chr06:31157132..31157156 (25 bp)	GATGTTAATATAAACCCTAATACCA	LOC_Os06g51440
Os.47871.1.S1_at--767--259	1	Chr06:31157144..31157168 (25 bp)	AACCCTAATACCAGTAACGATGAGT	LOC_Os06g51440
Os.47871.1.S1_at--359--395	1	NONE	CGATGAGTAATAAAAGCAACCTTGC	NONE
Os.47871.1.S1_at--226--371	1	Chr06:31157185..31157209 (25 bp)	CTAGGCTGATGTATATTTCTTGTGC	LOC_Os06g51440
Os.47871.1.S1_at--596--877	1	Chr06:31157194..31157218 (25 bp)	TGTATATTTCTTGTGCAGGCATGCT	LOC_Os06g51440
Os.47871.1.S1_at--635--1055	1	Chr06:31157201..31157225 (25 bp)	TTCTTGTGCAGGCATGCTAGGGCTA	LOC_Os06g51440
Os.47871.1.S1_at--454--487	1	Chr06:31157216..31157240 (25 bp)	GCTAGGGCTAATACATGTTGCACCT	LOC_Os06g51440
Os.47871.1.S1_at--274--759	1	Chr06:31157220..31157244 (25 bp)	GGGCTAATACATGTTGCACCTGTAT	LOC_Os06g51440
Os.47871.1.S1_at--836--351	1	Chr06:31157229..31157253 (25 bp)	CATGTTGCACCTGTATTTGTAATAT	LOC_Os06g51440

Target Sequence

TGGCCATTAAATATCATTACTACATATTAAGAATGGTTGAAATCAATTAAGTAAAGTTGTTAGTGCTAATGATGTTAATA
TAAACCCTAATACCAGTAACGATGAGTAATAAAAGCAACCTTGCTAGGCTGATGTATATTTCTTGTGCAGGCATGCTAGG
GCTAATACATGTTGCACCTGTATTTGTAATAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis