Browse Element(s) Details


Os.53248.1.A1_at

Description gb:AK071566.1
DB_XREF= gi:32981589
TID=Os.53248.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104M24, full insert sequence.
FL= gb:AK071566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5142011/11coiled-coil domain containing 12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51390Os.11834.1.S1_at11/116+31126432..31129684expressed protein
LOC_Os06g51400Os.10478.1.S1_at11/116+31131894..31135053expressed protein
LOC_Os06g51410Os.9263.1.S1_s_at11/116+31135694..31144707prolyl oligopeptidase family protein, expressed
LOC_Os06g51410Os.9263.1.S1_at11/116+31135694..31144707prolyl oligopeptidase family protein, expressed
LOC_Os06g51420Os.53248.1.A1_at11/116+31146959..31149547coiled-coil domain containing 12, putative, expressed
LOC_Os06g51430Os.51219.1.S1_at11/116+31150350..31155613signal peptide peptidase family protein, expressed
LOC_Os06g51440Os.47871.1.S1_at10/116+31156331..31157286transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g51450OsAffx.16021.1.S1_at11/116+31160734..31168410PHD-finger family protein, expressed
LOC_Os06g51450Os.5716.1.S1_at11/116+31160734..31168410PHD-finger family protein, expressed
LOC_Os06g51460Os.23434.1.S1_at11/116+31168672..31173839ABC transporter family protein, putative, expressed
LOC_Os06g51460Os.23434.1.S1_s_at11/116+31168672..31173839ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53248.1.A1_at--1141--3451Chr06:31148740..31148764 (25 bp)
CAGTGTCCCTCCCAAAGTTTGAGGA
LOC_Os06g51420
Os.53248.1.A1_at--958--6851Chr06:31148756..31148780 (25 bp)
GTTTGAGGATCCAATTTCTGCTGAA
LOC_Os06g51420
Os.53248.1.A1_at--381--8911Chr06:31148893..31148915 (23 bp)
TGAGAACCCCTTTGGAAACATAGCT
LOC_Os06g51420
Os.53248.1.A1_at--461--5411Chr06:31148975..31148999 (25 bp)
GAAGCGCACGCAGAAAGCACTGGCT
LOC_Os06g51420
Os.53248.1.A1_at--990--3331Chr06:31148992..31149139 (25 bp)
CACTGGCTGAGATTGCATTGGAACA
LOC_Os06g51420
Os.53248.1.A1_at--210--5311Chr06:31149165..31149189 (25 bp)
GAAGGAAGCGATGCAGCCCAAGATT
LOC_Os06g51420
Os.53248.1.A1_at--260--1111Chr06:31149309..31149333 (25 bp)
AGTGTGCGACTATACGTTTGTAAGC
LOC_Os06g51420
Os.53248.1.A1_at--426--6551Chr06:31149355..31149379 (25 bp)
GATTCAGGTTGCTAGACCCGTGTGC
LOC_Os06g51420
Os.53248.1.A1_at--690--4251Chr06:31149372..31149396 (25 bp)
CCGTGTGCTCACTGCTTGATTAAGT
LOC_Os06g51420
Os.53248.1.A1_at--680--3151Chr06:31149455..31149479 (25 bp)
AATTCTCTTGTAAGTCAACTGTGCT
LOC_Os06g51420
Os.53248.1.A1_at--30--3271Chr06:31149470..31149494 (25 bp)
CAACTGTGCTTAGATTCTGATGCTG
LOC_Os06g51420
Target Sequence 
CAGTGTCCCTCCCAAAGTTTGAGGATCCAATTTCTGCTGAAACTACAGAGCCAAAGCAAGTTGAGAACCCCTTTGGAAAC
ATAGCTCCAAAGAATCCAAATTGGGATCTGAAAAGAGATGTGCAGAAGAGGATGGACAAACTTGAGAAGCGCACGCAGAA
AGCACTGGCTGAGATTGCATTGGAACAACAAAAGGAGAAAGAAGCACTTGGGGAAGGAAGCGATGCAGCCCAAGATTGAG
GGAGGGCTCAGGGGAGATGGATATGAAGTAGCTGAACCTTTGATATGTTAAGAATGCTCAAGGGGTGCACTGTGAACTGA
TGAAAAGCTAATGGTAACATTCGGGGTCTAGCAATTAGTGTGCGACTATACGTTTGTAAGCATGGAAAACCTTAATAAAC
CTGATTCAGGTTGCTAGACCCGTGTGCTCACTGCTTGATTAAGTGTAGTTAGGGGACTCGCATTGTACTACCCCCACCAA
AATGTATGTTTGTGTTGTGCTTAATTCTCTTGTAAGTCAACTGTGCTTAGATTCTGATGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53248.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis