Browse Element(s) Details


Os.21854.1.S1_at

Description gb:AK119390.1
DB_XREF= gi:37989013
TID=Os.21854.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-C09, full insert sequence.
FL= gb:AK119390.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g269102/11hypothetical protein
LOC_Os05g203101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g325301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26880OsAffx.16430.2.S1_s_at11/117+15564784..15565477hypothetical protein
LOC_Os07g26880OsAffx.16430.2.S1_at11/117+15564784..15565477hypothetical protein
LOC_Os07g26880OsAffx.16430.1.S1_at4/117+15564784..15565477hypothetical protein
LOC_Os07g26890NANA7+15570092..15570316hypothetical protein
LOC_Os07g26900OsAffx.28611.1.S1_at11/117+15578389..15582560Alpha-galactosidase precursor, putative
LOC_Os07g26910Os.21854.1.S1_at2/117+15586962..15589233hypothetical protein
LOC_Os07g26920NANA7+15594065..155952743'-5' exonuclease domain-containing protein, putative, expressed
LOC_Os07g26930Os.5180.1.S1_at8/117+15596320..155989153'-5' exonuclease domain-containing protein, putative, expressed
LOC_Os07g26940Os.56132.1.S1_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.47132.1.A1_s_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.9465.1.S1_s_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26950OsAffx.28612.1.S1_at9/117+15607946..15609721hypothetical protein
LOC_Os07g26950OsAffx.27754.1.S1_at1/117+15607946..15609721hypothetical protein
LOC_Os07g26960OsAffx.16431.1.S1_at11/117+15612888..15614643hypothetical protein
LOC_Os07g26960OsAffx.16431.1.S1_x_at11/117+15612888..15614643hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21854.1.S1_at--1003--3891Chr06:16436606..16436630 (25 bp)
CTGGGGATGACCTCGGCTCTATCAG
NONE
Os.21854.1.S1_at--261--5731Chr06:16436569..16436593 (25 bp)
GACTGCGGCGGATGTGGAAGACCTC
NONE
Os.21854.1.S1_at--125--7711Chr06:16436534..16436558 (25 bp)
GGGTCTGCGCTTGACTGCAGCGGCG
NONE
Os.21854.1.S1_at--576--8191Chr06:16436448..16436472 (25 bp)
GGAAGGGCACCACTAGTACAGATCC
NONE
Os.21854.1.S1_at--553--89566Chr12:5779411..5779435 (25 bp)
TGACACCTATCAGTGACGGGCCGTA
NONE
Os.21854.1.S1_at--457--33743Chr12:5779414..5779438 (25 bp)
CACCTATCAGTGACGGGCCGTAGTT
NONE
Os.21854.1.S1_at--834--35979Chr12:1741913..1741934 (22 bp)
CATTCCATATCTCAAACGGGTCCAT
NONE
Os.21854.1.S1_at--739--10158Chr12:1741920..1741973 (25 bp)
TATCTCAAACGGGTCCATCTGTGAC
NONE
Os.21854.1.S1_at--119--2391Chr06:16436223..16436247 (25 bp)
AAACGGGTCCATCTGTGACGGGCAC
NONE
Os.21854.1.S1_at--812--7791Chr06:16436218..16436242 (25 bp)
GGTCCATCTGTGACGGGCACCAATT
NONE
Os.21854.1.S1_at--576--3891Chr06:16436211..16436235 (25 bp)
CTGTGACGGGCACCAATTTTAGGCC
NONE
Target Sequence 
CTGGGGATGACCTCGGCTCTATCAGGGGGCAGCGCTGGACTGCGGCGGATGTGGAAGACCTCGGCTCCGTCGGGGTCTGC
GCTTGACTGCAGCGGCGGCGGATGGGGAAGACCTCGGCTCCGGCGGTCACAGCGGTGGACTGCGGTGCCAGCGGCGGTGG
AAGGGCACCACTAGTACAGATCCTTCTATCTGTGACGGGCTCTAATATGCTTAGAAATAGCGGGCCGTCACAAGGAAGTC
ATCTCAATCGGGCCGAAAAGTGCCCGATTGAGATATGGTCGCACAGACATGTTAGATGGGCATAAAACTTAAGCCCATCA
CGGATGACACCTATCAGTGACGGGCCGTAGTTTAGGCCCGATTAAGATAACATTCCATATCTCAAACGGGTCCATCTGTG
ACGGGCACCAATTTTAGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis