Browse Element(s) Details


Os.21876.1.S1_at

Description gb:CA757909
DB_XREF= gi:25801948
DB_XREF=OE12B09_T3.ab1
CLONE=OE12B09_T3.ab1
TID=Os.21876.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.21876 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0185011/11NLI interacting factor-like phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01830OsAffx.16036.1.S1_x_at9/117+489913..490657hypothetical protein
LOC_Os07g01840Os.20517.1.S1_at11/117+494780..497280expressed protein
LOC_Os07g01850Os.21876.1.S1_at11/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01850OsAffx.5177.1.S1_at8/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01860Os.38052.1.S1_at11/117+514165..520238expressed protein
LOC_Os07g01870Os.4714.1.S1_at11/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_x_at10/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_at7/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01880Os.36267.1.S2_s_at11/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.36267.1.S1_s_at10/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.11217.1.S1_at1/117+524570..532642Leo1, expressed
LOC_Os07g01890Os.23660.1.S1_at11/117+533901..536093expressed protein
LOC_Os07g01890Os.23660.1.S2_at11/117+533901..536093expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21876.1.S1_at--1097--9811Chr07:509073..509097 (25 bp)
TAAACTGGAGAAGCCCTTTGCCTGA
LOC_Os07g01850
Os.21876.1.S1_at--412--6231Chr07:509096..509119 (24 bp)
GATGGCCCCGTTTGGTTCAGTCTGT
LOC_Os07g01850
Os.21876.1.S1_at--272--8251Chr07:509142..509166 (25 bp)
GGCATGAAGTTTTTGACCCCTGGTT
LOC_Os07g01850
Os.21876.1.S1_at--3--8591Chr07:509162..509186 (25 bp)
TGGTTCTGTTTGCTCGCTTGACACA
LOC_Os07g01850
Os.21876.1.S1_at--808--3351Chr07:509185..509209 (25 bp)
CACCTACCTGTAGCTACTTTTGTAC
LOC_Os07g01850
Os.21876.1.S1_at--633--7011Chr07:509206..509230 (25 bp)
GTACTAGTTCCGTAGAGCCTTAGAC
LOC_Os07g01850
Os.21876.1.S1_at--166--8231Chr07:509236..509260 (25 bp)
GGCAATTGCCCAGTTTTGATAGCTT
LOC_Os07g01850
Os.21876.1.S1_at--665--6491Chr07:509253..509277 (25 bp)
GATAGCTTGTTGTTTTGGTCCCTTC
LOC_Os07g01850
Os.21876.1.S1_at--397--7231Chr07:509270..509294 (25 bp)
GTCCCTTCCTGTTCTGAACTAGTGA
LOC_Os07g01850
Os.21876.1.S1_at--782--5231Chr07:509348..509372 (25 bp)
GAATCATTTAGTTTCCCGGCATCAA
LOC_Os07g01850
Os.21876.1.S1_at--1071--3011Chr07:509496..509520 (25 bp)
AATCATTGAACTCTCTGGTAACCTC
LOC_Os07g01850
Target Sequence 
TAAACTGGAGAAGCCCTTTGCCTGATGGCCCCGTTTGGTTCAGTCTGTTAAGCATTGAGCATTTGCATGGGCATGAAGTT
TTTGACCCCTGGTTCTGTTTGCTCGCTTGACACACCTACCTGTAGCTACTTTTGTACTAGTTCCGTAGAGCCTTAGACAA
TGGGGCAATTGCCCAGTTTTGATAGCTTGTTGTTTTGGTCCCTTCCTGTTCTGAACTAGTGATGAGATGGAAGAACGTAA
TACCTGTTNGCCTGTATTTCAGTCGCACGTACACTGAATCATTTAGTTTCCCGGCATCAAGGGTAACAGGGTTGTAATTG
TTAGTTCCCATTGGAAAATTTTGGTGAACTATTTGTTGTAACTTGTAAGAATGTTTCAAGCTGTAACCTTTCTCCCTTGC
ACAAAGTGCTGTAATCTTGTAACAATCATTGAACTCTCTGGTAACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis