Browse Element(s) Details


Os.21894.1.S1_at

Description gb:CA758094
DB_XREF= gi:25802133
DB_XREF=OE16F01_T3.ab1
CLONE=OE16F01_T3.ab1
TID=Os.21894.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.21894 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0039C14.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g317209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31680Os.9180.1.S1_at11/1110+16278418..16279130expressed protein
LOC_Os10g31690Os.46829.1.S1_at11/1110+16284309..16285065hypothetical protein
LOC_Os10g31700OsAffx.20289.1.S1_at11/1110+16287233..16288940hypothetical protein
LOC_Os10g31710Os.46829.1.S1_at2/1110+16291738..16292313hypothetical protein
LOC_Os10g31710Os.46669.1.A1_at1/1110+16291738..16292313hypothetical protein
LOC_Os10g31720Os.21894.1.S1_at9/1110+16296433..16297165expressed protein
LOC_Os10g31720Os.46829.1.S1_at1/1110+16296433..16297165expressed protein
LOC_Os10g31730Os.46669.1.A1_at7/1110+16305109..16305924expressed protein
LOC_Os10g31740NANA10+16309565..16311322hypothetical protein
LOC_Os10g31750OsAffx.20288.1.S1_at11/1110+16314140..16315824hypothetical protein
LOC_Os10g31760OsAffx.18479.1.S1_at11/1110+16319426..16320593hypothetical protein
LOC_Os10g31760OsAffx.29576.3.S1_x_at1/1110+16319426..16320593hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21894.1.S1_at--1033--6891Chr10:16296943..16296967 (25 bp)
GTAGCAGTAACTATTACGGTGCCCA
LOC_Os10g31720
Os.21894.1.S1_at--718--7051Chr10:16296937..16296961 (25 bp)
GTAACTATTACGGTGCCCATGCAAG
LOC_Os10g31720
Os.21894.1.S1_at--957--9611Chr10:16296692..16296716 (25 bp)
TCAGGCTCTAGCGAGGCTAATAACT
LOC_Os10g31720
Os.21894.1.S1_at--1018--8271Chr10:16296678..16296702 (25 bp)
GGCTAATAACTACTGGAGTGGACCA
LOC_Os10g31720
Os.21894.1.S1_at--651--8031Chr10:16296664..16296688 (25 bp)
GGAGTGGACCATATGCAAACGCAAA
LOC_Os10g31720
Os.21894.1.S1_at--665--3971Chr10:16296593..16296617 (25 bp)
CGTGGCGTTGGTGCGGGTTCTGGAT
LOC_Os10g31720
Os.21894.1.S1_at--1121--8531Chr10:16296520..16296539 (20 bp)
TGGAGCCTACCATCTCATGTTATGT
LOC_Os10g31720
Os.21894.1.S1_at--1054--9971NONE
TACCATCTCATGTTATGTCTAGAAG
NONE
Os.21894.1.S1_at--908--7151Chr10:16296492..16296516 (25 bp)
GTCTAGAAGTATAATTCGTTATCAT
LOC_Os10g31720
Os.21894.1.S1_at--302--111Chr10:16296479..16296503 (25 bp)
ATTCGTTATCATTTGTTTGTACTTG
LOC_Os10g31720
Os.21894.1.S1_at--301--8751NONE
TGTACTTGTTTCATACGTTGTTCAA
NONE
Target Sequence 
GTAGCAGTAACTATTACGGTGCCCATGCAAGTGGTGGAGGTGGCGGCGGAGGTGGTGGTTACAGTCAATACGGTGGATCA
GGATCTGGTAGCGGATATGGCACGGGCTNAGGCTCTAGCCAGACCTCTCAAAATGGATATTATGGTTATGGNGGNTCATC
CAGNGCTGGCGGTGCTGGTGCTGGTGGCGGTGCCGGACAAGCNGGTGGTTATTGGCCATCNTANGGTCATGGGTCTGGTA
GNGGTACCGGCTCAGGCTCTAGCGAGGCTAATAACTACTGGAGTGGACCATATGCAAACGCAAATGCCGGTGGCAATGGT
GGTGGTAACGGCCAANGCCAATATGGTGGCCGTGGCGTTGGTGCGGGTTCTGGATCNGGGTACGGTGANGCGAACCCTNN
ATTNCCTNCGTAANGGAAATTAANNAAATGGAGCCTACCATCTCATGTTATGTCTAGAAGTATAATTCGTTATCATTTGT
TTGTACTTGTTTCATACGTTGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis