Browse Element(s) Details


Os.2210.1.S1_at

Description gb:AF032972.1
DB_XREF= gi:2655286
GEN=GER2
TID=Os.2210.1
CNT=35
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.2210 (NCBI UniGene Cluster)
DEF=Oryza sativa germin-like protein 2 (GER2) mRNA, complete cds.
PROD=germin-like protein 2
FL= gb:AF032972.1 gb:AK059781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0897011/11Germin-like protein subfamily 1 member 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08940NANA8+5189767..5193072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08950Os.47463.1.S1_x_at4/118+5194673..5199735transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08950Os.14491.2.S1_x_at3/118+5194673..5199735transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08960Os.1853.1.S1_at11/118+5202045..5203162Germin-like protein subfamily 1 member 14 precursor, putative, expressed
LOC_Os08g08970Os.2210.1.S1_at11/118+5215876..5216960Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g08980Os.2209.1.S1_at11/118+5222478..5223690Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g08980Os.2321.1.S1_at1/118+5222478..5223690Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g08990NANA8+5227520..5228375Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09000NANA8+5232728..5233582Germin-like protein subfamily 1 member 7 precursor, putative
LOC_Os08g09010Os.2211.1.S1_at11/118+5236153..5237313Germin-like protein subfamily 1 member 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031012cellular_componentextracellular matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2210.1.S1_at--906--2971Chr08:5216400..5216424 (25 bp)
AATGGGTGTCAACCCACCACATGTG
LOC_Os08g08970
Os.2210.1.S1_at--488--8691Chr08:5216421..5216445 (25 bp)
TGTGCATCCTCGTGCTACTGAGCTT
LOC_Os08g08970
Os.2210.1.S1_at--668--10211Chr08:5216479..5216503 (25 bp)
TTTGTTACATCCAACCCTAACAGGC
LOC_Os08g08970
Os.2210.1.S1_at--1056--1371Chr08:5216577..5216601 (25 bp)
AGACCACAATAAGCCTGCGGTTGCC
LOC_Os08g08970
Os.2210.1.S1_at--345--2031Chr08:5216638..5216662 (25 bp)
ACTATTGCTAGTGCCATATTTGGAT
LOC_Os08g08970
Os.2210.1.S1_at--169--10871Chr08:5216727..5216751 (25 bp)
TTGGCTGAAGTCTCAATTCTCGGAG
LOC_Os08g08970
Os.2210.1.S1_at--820--91Chr08:5216742..5216766 (25 bp)
ATTCTCGGAGAATAACCACTACTGA
LOC_Os08g08970
Os.2210.1.S1_at--111--9591Chr08:5216779..5216803 (25 bp)
TCTTGATTGTTCCTTTGTGCGTTAT
LOC_Os08g08970
Os.2210.1.S1_at--268--3451Chr08:5216856..5216880 (25 bp)
CAGTATGTTTGATCGTCCATGTTTA
LOC_Os08g08970
Os.2210.1.S1_at--193--651Chr08:5216890..5216914 (25 bp)
ATGCAATATGGACACAGTACGGCGT
LOC_Os08g08970
Os.2210.1.S1_at--737--9911Chr08:5216907..5216931 (25 bp)
TACGGCGTCCTTTTCCTAATTATAT
LOC_Os08g08970
Target Sequence 
AATGGGTGTCAACCCACCACATGTGCATCCTCGTGCTACTGAGCTTCTCACTGTGCTTGAGGGAACACTTTATGTTGGTT
TTGTTACATCCAACCCTAACAGGCTCTTCTCCAAGGTGGTGCATAAGGGTGATGTGTTCGTGTTCCCTAAGGCAATGATT
CACTTTCAAATGAACCTAGACCACAATAAGCCTGCGGTTGCCCAATCAGCACTCAGCAGTCAAAACCCAGGAGTTATTAC
TATTGCTAGTGCCATATTTGGATCAACGCCACCAATCTCTGATGATGTTTTAGTCAAGGCATTTCAAGTGGAGAAGAAGG
TGATTGATTGGCTGAAGTCTCAATTCTCGGAGAATAACCACTACTGATTATATCATGTTTCTTGATTGTTCCTTTGTGCG
TTATAATATGTATAATAAATGGGCTTTTGCCTAGTTGATGTCATGGTATGCTAAAACAGTATGTTTGATCGTCCATGTTT
AATAAATGTAATGCAATATGGACACAGTACGGCGTCCTTTTCCTAATTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis