Browse Element(s) Details


Os.22276.1.S1_a_at

Description gb:AY129829.2
DB_XREF= gi:37179505
TID=Os.22276.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22276 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) ADT-36 drought-inducible protein 1OS mRNA, complete cds.
PROD=drought-inducible protein 1OS
FL= gb:AY129829.2 gb:AK100774.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5763011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57590OsAffx.23826.1.S1_at11/111+33627675..33629510hypothetical protein
LOC_Os01g57599Os.11595.1.S2_at11/111+33629527..33631391retrotransposon protein, putative, LINE subclass, expressed
LOC_Os01g57599Os.11595.1.S1_at11/111+33629527..33631391retrotransposon protein, putative, LINE subclass, expressed
LOC_Os01g57610Os.36449.1.S1_at11/111+33635296..33637781Indole-3-acetic acid-amido synthetase GH3.6, putative, expressed
LOC_Os01g57620Os.28605.1.S1_at11/111+33643891..33644760expressed protein
LOC_Os01g57630Os.22276.1.S1_a_at11/111+33644887..33649756pentatricopeptide, putative, expressed
LOC_Os01g57650Os.37921.2.S1_at11/111+33656401..33658783zinc finger family protein, putative, expressed
LOC_Os01g57660OsAffx.23827.1.S1_x_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57660OsAffx.23827.1.S1_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57670OsAffx.9512.1.S1_x_at11/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.9512.1.S1_at10/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.8455.1.S1_at2/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.12338.1.S1_at1/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22276.1.S1_a_at--546--7631Chr01:33645954..33645978 (25 bp)
GGGACATATCATACCCTCATACCAT
LOC_Os01g57630
Os.22276.1.S1_a_at--546--3751Chr01:33645969..33645993 (25 bp)
CTCATACCATGTCTTGTCAAGGCTG
LOC_Os01g57630
Os.22276.1.S1_a_at--924--3191Chr01:33645986..33646010 (25 bp)
CAAGGCTGGTGAGCTCGATTATGCT
LOC_Os01g57630
Os.22276.1.S1_a_at--1124--10031Chr01:33646046..33646070 (25 bp)
TAGAGTGGACTGTTTTGTGCTGCAA
LOC_Os01g57630
Os.22276.1.S1_a_at--43--8951Chr01:33646078..33646102 (25 bp)
TGACTGCATTGGTCACGGCATCGAG
LOC_Os01g57630
Os.22276.1.S1_a_at--497--4931Chr01:33646130..33646154 (25 bp)
GCTTGGATGGAACAACTCCTACCCA
LOC_Os01g57630
Os.22276.1.S1_a_at--853--3711Chr01:33646148..33646172 (25 bp)
CTACCCACGGAGGATCTTGAATATT
LOC_Os01g57630
Os.22276.1.S1_a_at--470--2911Chr01:33646243..33646267 (25 bp)
AAGGATGTACCTCCATGTGTTCTTC
LOC_Os01g57630
Os.22276.1.S1_a_at--1068--10571Chr01:33646265..33646467 (25 bp)
TTCTCTGATCAGTCTTACCGATGGT
LOC_Os01g57630
Os.22276.1.S1_a_at--895--10051Chr01:33648249..33648273 (25 bp)
TAGTATACTAGTCTGCTGTTGCGGA
LOC_Os01g57630
Os.22276.1.S1_a_at--480--3871Chr01:33648264..33648288 (25 bp)
CTGTTGCGGACATTGGAAGTATCTC
LOC_Os01g57630
Target Sequence 
GGGACATATCATACCCTCATACCATGTCTTGTCAAGGCTGGTGAGCTCGATTATGCTCTGAAGTGCTGTCATGAGATATA
TGGTAAGAACCTTAGAGTGGACTGTTTTGTGCTGCAAGAGGTAGTGACTGCATTGGTCACGGCATCGAGGGTGGAGGATG
CCACCAAGATTGTTGAGCTTGGATGGAACAACTCCTACCCACGGAGGATCTTGAATATTCCACATGCTACAGAGAAAAAC
AAGGAAGAATCAATTTCAGAAGAGGAAGAGGAGCCTGAAAATGCTTGACAAGGATGTACCTCCATGTGTTCTTCTCTGAT
CAGTCTTACCGATGGTTATCATTTTGCTATAGTATACTAGTCTGCTGTTGCGGACATTGGAAGTATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22276.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis