Browse Element(s) Details


Os.22484.1.A1_at

Description gb:BU673915
DB_XREF= gi:23515029
DB_XREF=NL_22_11
CLONE=NL_22_11
TID=Os.22484.1
CNT=10
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.22484 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131C05, full insert sequence
FL= gb:AK120556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2957011/11one helix protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29540OsAffx.31928.1.S1_at11/1112+17601949..17603971hypothetical protein
LOC_Os12g29550Os.5901.1.S1_at11/1112+17606379..17612543expressed protein
LOC_Os12g29560Os.14424.1.S1_at11/1112+17613382..17617948DHHC zinc finger domain containing protein, expressed
LOC_Os12g29570Os.22484.1.A1_at11/1112+17618456..17619268one helix protein, putative, expressed
LOC_Os12g29570OsAffx.27590.1.S1_at1/1112+17618456..17619268one helix protein, putative, expressed
LOC_Os12g29580Os.19371.1.S1_at11/1112+17622105..17626347protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009644biological_processresponse to high light intensity
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22484.1.A1_at--633--9751Chr12:17618490..17618514 (25 bp)
TAATCTCCATAGTTCAACCACCATC
LOC_Os12g29570
Os.22484.1.A1_at--97--5231Chr12:17618563..17618587 (25 bp)
GAATAATCCTGCCATCTCAGCAAGA
LOC_Os12g29570
Os.22484.1.A1_at--161--5871Chr12:17618784..17618808 (25 bp)
GAGCCATTCCTAGGGTTCACCAAGA
LOC_Os12g29570
Os.22484.1.A1_at--757--991Chr12:17618815..17618839 (25 bp)
AGGTTTGGAACTCTAGGGCCTGCAT
LOC_Os12g29570
Os.22484.1.A1_at--409--8911Chr12:17618990..17619014 (25 bp)
TGAGCAAGGGTGTTCTTCAGACAAT
LOC_Os12g29570
Os.22484.1.A1_at--825--5551Chr12:17619030..17619054 (25 bp)
GAAAGGACTCGATCTTCCACTGTAG
LOC_Os12g29570
Os.22484.1.A1_at--276--6431Chr12:17619040..17619064 (25 bp)
GATCTTCCACTGTAGTTCTTCAGGA
LOC_Os12g29570
Os.22484.1.A1_at--755--6111Chr12:17619090..17619114 (25 bp)
GAGTGACCTGTTTTTCTCTTCAGAA
LOC_Os12g29570
Os.22484.1.A1_at--975--10091Chr12:17619149..17619173 (25 bp)
TATGTACTCCTATATGCTAAGCCCC
LOC_Os12g29570
Os.22484.1.A1_at--1056--9711Chr12:17619166..17619190 (25 bp)
TAAGCCCCTTACATTCCGTTGTTAT
LOC_Os12g29570
Os.22484.1.A1_at--878--10011Chr12:17619192..17619216 (25 bp)
TAGCATATTCTGTCGTTGCCACAGT
LOC_Os12g29570
Target Sequence 
TAATCTCCATAGTTCAACCACCATCCCTCCTGGCAATCCAATTCCAACCCCTCCAGAACAACAGATTCAAGAGGAATAAT
CCTGCCATCTCAGCAAGAGCAAGAACTGTCAGAGCTAGGGCAGCAGAGCTCCCAGCAGGAGTTGTGGTGCCAAGGGAGCA
GCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATTGGTCTCA
TTGGGGTTTTCATTGTGGAGCTGGTGCTGAGCAAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGAT
CTTCCACTGTAGTTCTTCAGGAATTTGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATTGGA
TATGTCAATTAATGCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGCATATTCT
GTCGTTGCCACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22484.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis