Browse Element(s) Details


Os.22658.1.S1_at

Description gb:AK102596.1
DB_XREF= gi:32987805
TID=Os.22658.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22658 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1045D11.23 (B1045D11.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098J19, full insert sequence.
FL= gb:AK102596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2774011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27710NANA1+15775867..15776478hypothetical protein
LOC_Os01g27720Os.19624.1.S1_at5/111+15780486..15784678zinc finger family protein, putative, expressed
LOC_Os01g27730Os.6742.1.S1_at11/111+15788950..15793626expressed protein
LOC_Os01g27740Os.22658.1.S1_at11/111+15801150..15805188DnaJ domain containing protein, expressed
LOC_Os01g27750Os.7136.1.S1_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed
LOC_Os01g27750Os.7136.2.S1_x_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed
LOC_Os01g27760OsAffx.23423.1.S1_at11/111+15821755..15823146hypothetical protein
LOC_Os01g27770OsAffx.11231.1.S1_at11/111+15829852..15832481dehydroquinate dehydratase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22658.1.S1_at--65--7611Chr01:15801687..15801711 (25 bp)
GGGCACTCTGGAGATACCTACAAAT
LOC_Os01g27740
Os.22658.1.S1_at--492--6491Chr01:15801639..15801663 (25 bp)
GATACCTTCTTTCCGGCTGACAAAA
LOC_Os01g27740
Os.22658.1.S1_at--266--2391Chr01:15801612..15801636 (25 bp)
AAACGGTGGCAAACTCTGTGGCTTT
LOC_Os01g27740
Os.22658.1.S1_at--272--10651Chr01:15801565..15801589 (25 bp)
TTCCTGATACTTTCCTGTTCCGGAG
LOC_Os01g27740
Os.22658.1.S1_at--557--2911Chr01:15801494..15801518 (25 bp)
AAGGATCTGGTCTCTTGTATGCTCT
LOC_Os01g27740
Os.22658.1.S1_at--888--6911Chr01:15801478..15801502 (25 bp)
GTATGCTCTTCTAGTAGGGTGTTCA
LOC_Os01g27740
Os.22658.1.S1_at--770--7911Chr01:15801319..15801343 (25 bp)
GGTTGTCAATTTCTCTTGAGGCGTT
LOC_Os01g27740
Os.22658.1.S1_at--1140--9911Chr01:15801264..15801288 (25 bp)
TACTGCAATTTTTCTGGAGCCAAGC
LOC_Os01g27740
Os.22658.1.S1_at--673--8091Chr01:15801249..15801273 (25 bp)
GGAGCCAAGCTTCTTTTCTGGCCAG
LOC_Os01g27740
Os.22658.1.S1_at--1115--7431Chr01:15801222..15801246 (25 bp)
GTGTCATGGGCCTGTGCTCAAAGAA
LOC_Os01g27740
Os.22658.1.S1_at--595--231Chr01:15801151..15801175 (25 bp)
ATATTTGTGCCCTTTCATTTGGTAG
LOC_Os01g27740
Target Sequence 
GGGCACTCTGGAGATACCTACAAATGAAAACATAAGGTTTTCTCACCTGATACCTTCTTTCCGGCTGACAAAAGAAAACG
GTGGCAAACTCTGTGGCTTTTATGAGCTGGATCCAGCTTCTGTTCCTGATACTTTCCTGTTCCGGAGCGGCCGCTGATTG
GCAAATGTTGATGCNGACTGTCCTGGAGATAGTAAGGATCTGGTCTCTTGTATGCTCTTCTAGTAGGGTGTTCATACACC
ACGCAGCTGTGGTGCAAACCAAACCATGCTATCTTNTTCTAATGTTGAGGCCTCNTGTGCTCATTCAGTTAGTTATTAGG
TTAAAATTGCATGTTGCATTGGCANTTTGGCATGTGATGCAGTGATTATCTGGTTGTCAATTTCTCTTGAGGCGTTNGCC
CTGAGAGCAAATGGGNAATGTCANTGCATACTGCAATTTTTCTGGAGCCAAGCTTCTTTTCTGGCCAGTGGTGTCATGGG
CCTGTGCTCAAAGAAGTATTGCAACCTGTAACATATAGGTTGCTTCTTGCTGTGCTTTAATATATTTGTGCCCTTTCATT
TGGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis