Browse Element(s) Details


Os.22666.1.S1_at

Description gb:AK072487.1
DB_XREF= gi:32982510
TID=Os.22666.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0027P10.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131J20, full insert sequence.
FL= gb:AK072487.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4146011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41410Os.2715.1.S1_at11/1110+21928264..21930749Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os10g41420NANA10+21932185..21932823expressed protein
LOC_Os10g41430Os.46852.1.S1_at11/1110+21938911..21940946Cyclin, N-terminal domain containing protein, expressed
LOC_Os10g41440Os.2720.1.S1_at11/1110+21944875..21948320KH domain-containing protein, putative, expressed
LOC_Os10g41450Os.52788.1.S1_at10/1110+21948992..21951672mediator complex subunit SOH1, putative, expressed
LOC_Os10g41460Os.22666.1.S1_at11/1110+21954678..21956227expressed protein
LOC_Os10g41470Os.12785.1.S1_at11/1110+21958726..2195969760S ribosomal protein L27, putative, expressed
LOC_Os10g41480Os.46823.1.S1_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41480Os.46823.2.S1_x_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41490Os.3401.1.S1_at11/1110+21965068..21967958Serine/threonine-protein kinase SAPK3, putative, expressed
LOC_Os10g41510Os.22461.1.S1_at11/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41510OsAffx.18720.1.S1_at3/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41520Os.11223.1.S1_at11/1110+21979225..21984175Casein kinase II beta-4 subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22666.1.S1_at--633--8891Chr10:21955649..21955673 (25 bp)
TGAGATGAAGCGCACCCAGACGCTG
LOC_Os10g41460
Os.22666.1.S1_at--136--1471Chr10:21955741..21955765 (25 bp)
AGAAGGCCAAGGTGATCTCCGCCGC
LOC_Os10g41460
Os.22666.1.S1_at--122--6171Chr10:21955794..21955818 (25 bp)
GAGGATTGATCTACTCCATGTTGTT
LOC_Os10g41460
Os.22666.1.S1_at--192--6631Chr10:21955816..21955840 (25 bp)
GTTGGTATGGCCTACTATGTGTTTA
LOC_Os10g41460
Os.22666.1.S1_at--561--3651Chr10:21955851..21955875 (25 bp)
CTTCTCATTGTTAACTGCTGGTGTT
LOC_Os10g41460
Os.22666.1.S1_at--642--7391Chr10:21955976..21956000 (25 bp)
GTGAGTGCTCAGTTAAGCTGCCTGT
LOC_Os10g41460
Os.22666.1.S1_at--668--2691Chr10:21955990..21956014 (25 bp)
AAGCTGCCTGTAATCAGTTCAGTGA
LOC_Os10g41460
Os.22666.1.S1_at--391--8852Chr10:21956012..21956036 (25 bp)
TGATCTTGTGCTTGAGTTGCTGCTG
LOC_Os10g41460
Os.22666.1.S1_at--732--1591Chr10:21956041..21956065 (25 bp)
AGCTGCCTTGTCCAAATACTTCTGT
LOC_Os10g41460
Os.22666.1.S1_at--1076--3451Chr10:21956098..21956122 (25 bp)
CAGTGTCCTGTGTCATGTTCTATGT
LOC_Os10g41460
Os.22666.1.S1_at--166--5371Chr10:21956162..21956186 (25 bp)
GAAGAAGCCTTGCACTGTAGTAACA
LOC_Os10g41460
Target Sequence 
TGAGATGAAGCGCACCCAGACGCTGCTCGACGCCCAGCAGCTGTTCGTCGAGGCCTTCCTCGGCAAGCAGCAGCACCACC
ACCACCACCACAAGAAGGCCAAGGTGATCTCCGCCGCCGCTGCCGCAGCAACAGCCGCCATGGATGAGGATTGATCTACT
CCATGTTGTTGGTATGGCCTACTATGTGTTTAGTAATGTTTACTTCTCATTGTTAACTGCTGGTGTTNNNNNNNGACTTG
TGATAATTCTACTAGCTGTTGTTTGTGTTTGGGAGGGTGATTAAAGTAGTCAGGTGTAGGATATGGAGTGGGGGAGTGAG
GAGGAGGATTAGGAGTGAGTGCTCAGTTAAGCTGCCTGTAATCAGTTCAGTGATCTTGTGCTTGAGTTGCTGCTGCTGAA
GCTGCCTTGTCCAAATACTTCTGTAGTAGCATATTATTGTCAGGTTTTTACTCANTCAGTGTCCTGTGTCATGTTCTATG
TTTNGATGATCCTAAGCCTTGGAGTATGTGACAGTAACTTGAAGAAGCCTTGCACTGTAGTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis