Browse Element(s) Details


Os.22671.1.S1_x_at

Description gb:AK111396.1
DB_XREF= gi:32996605
TID=Os.22671.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-D06, full insert sequence.
FL= gb:AK111396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g055408/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05520OsAffx.12740.1.S1_s_at11/113+2718728..2722222expressed protein
LOC_Os03g05530OsAffx.24981.1.S1_at11/113+2727371..2732402Integral membrane protein DUF6 containing protein, expressed
LOC_Os03g05540OsAffx.24982.1.S1_at11/113+2736847..2741352TPR Domain containing protein, expressed
LOC_Os03g05540Os.22671.1.S1_x_at8/113+2736847..2741352TPR Domain containing protein, expressed
LOC_Os03g05550OsAffx.24983.1.S1_at11/113+2742575..2743267hypothetical protein
LOC_Os03g05560OsAffx.12741.1.S1_at11/113+2750298..2751529Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g05570Os.20060.1.S1_at11/113+2755737..2756880Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22671.1.S1_x_at--568--6031Chr03:2738180..2738204 (25 bp)
GAGATGCTTATCTTGCCATGAACCA
LOC_Os03g05540
Os.22671.1.S1_x_at--1038--4411Chr03:2738194..2738218 (25 bp)
GCCATGAACCAATCAGAGTCAGCTA
LOC_Os03g05540
Os.22671.1.S1_x_at--64--6171Chr03:2738275..2738299 (25 bp)
GAGGATACTATCGACACCATCCAGT
LOC_Os03g05540
Os.22671.1.S1_x_at--862--5631Chr03:2738287..2738311 (25 bp)
GACACCATCCAGTCCATTGCAAATG
LOC_Os03g05540
Os.22671.1.S1_x_at--129--4891Chr03:2739410..2739434 (25 bp)
GCTTATGAAAGCTGTGGCCCTGGTG
LOC_Os03g05540
Os.22671.1.S1_x_at--297--8411Chr03:2739425..2739449 (25 bp)
GGCCCTGGTGCTTTCGAGGAACTCA
LOC_Os03g05540
Os.22671.1.S1_x_at--4--8171NONE
GGAACTCAGGGAAGCTCAAAGACTT
NONE
Os.22671.1.S1_x_at--806--3271NONE
CAAAGACTTCGGTATCAGCTAAAAA
NONE
Os.22671.1.S1_x_at--1017--2351Chr03:2739485..2739509 (25 bp)
AAAGCCCGAGGTTTACCTCATGCAT
LOC_Os03g05540
Os.22671.1.S1_x_at--624--4271Chr03:2739515..2739539 (25 bp)
CCTGCCAACTCATTGCCAACTAAAT
LOC_Os03g05540
Os.22671.1.S1_x_at--971--3091NONE
AATAGTTCTTCTCTCATCAATGTCC
NONE
Target Sequence 
GAGATGCTTATCTTGCCATGAACCAATCAGAGTCAGCTATAAAGTACTTTACTATTGCGAAGGACATTATTAATGCTACA
TATGGGCCAAAACATGAGGATACTATCGACACCATCCAGTCCATTGCAAATGCATATGGGGTGATGGGAAGCTACAAGCA
GGCAATGGATTACCAAGAACAAGTTATAGATGCTTATGAAAGCTGTGGCCCTGGTGCTTTCGAGGAACTCAGGGAAGCTC
AAAGACTTCGGTATCAGCTAAAAATAAAAGCCCGAGGTTTACCTCATGCATGCTTCCCTGCCAACTCATTGCCAACTAAA
TTCCAAGACCGAGAATAGTTCTTCTCTCATCAATGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22671.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis