Browse Element(s) Details


Os.22723.1.S1_a_at

Description gb:AK119682.1
DB_XREF= gi:37989305
TID=Os.22723.1
CNT=244
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.22723 (NCBI UniGene Cluster)
UG_TITLE=Elicitor and UV light related transcription factor (Elr) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-157-A01, full insert sequence.
FL= gb:AK119682.1 gb:AY083611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5722011/11Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57170OsAffx.14454.1.S1_at11/114+33845694..33846643hypothetical protein
LOC_Os04g57180Os.49944.1.S1_at10/114+33848590..33851736oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_s_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190Os.24656.1.S1_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_at9/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57200Os.7115.1.S1_a_at11/114+33861558..33862845heavy metal-associated domain containing protein, expressed
LOC_Os04g57210Os.9650.1.A1_at11/114+33864372..33868483Actin family protein, expressed
LOC_Os04g57220Os.22723.1.S1_a_at11/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57220Os.22723.3.S1_x_at5/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57230Os.20204.4.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57230Os.5935.1.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57240Os.51414.1.S1_at4/114+33876674..33877784hypothetical protein
LOC_Os04g57250OsAffx.23181.1.S1_x_at11/114+33879770..33880396hypothetical protein
LOC_Os04g57260Os.12273.1.S1_at1/114+33882989..33883390expressed protein
LOC_Os04g57270Os.12273.1.S1_at11/114+33885403..33885908expressed protein
LOC_Os04g57280Os.12275.1.S1_at11/114+33887578..33888100expressed protein
LOC_Os04g57290Os.27287.1.S1_at11/114+33891420..33893101F-box domain containing protein, expressed
LOC_Os04g57300Os.38230.1.S1_at11/114+33895065..33897846phosphatidylinositol 3- and 4-kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22723.1.S1_a_at--982--8131Chr04:33870100..33870124 (25 bp)
GGACATGTTCCATTGGCAAGCTACT
LOC_Os04g57220
Os.22723.1.S1_a_at--1130--5151Chr04:33870085..33870109 (25 bp)
GCAAGCTACTATTATGGGACCCTCA
LOC_Os04g57220
Os.22723.1.S1_a_at--231--3751Chr04:33870064..33870088 (25 bp)
CTCAGACAGCCCATTTGCTGGTGGG
LOC_Os04g57220
Os.22723.1.S1_a_at--848--8611Chr04:33870032..33870056 (25 bp)
TGGTGAACATTCATTTCCCACCGGA
LOC_Os04g57220
Os.22723.1.S1_a_at--842--2831Chr04:33869363..33869387 (25 bp)
AAGTATGAATCCACCGCTCGCTCCT
LOC_Os04g57220
Os.22723.1.S1_a_at--661--4791Chr04:33869344..33869368 (25 bp)
GCTCCTGGACACAGAAGTACGCCAT
LOC_Os04g57220
Os.22723.1.S1_a_at--1130--1691Chr04:33869308..33869332 (25 bp)
AGCCAAACTGGTGGACGTGTCGAAA
LOC_Os04g57220
Os.22723.1.S1_a_at--375--7331Chr04:33869292..33869316 (25 bp)
GTGTCGAAACCCAACGACGTTATCA
LOC_Os04g57220
Os.22723.1.S1_a_at--441--2251Chr04:33869264..33869288 (25 bp)
AAATAACCATCAAGTCACCACTCTC
LOC_Os04g57220
Os.22723.1.S1_a_at--341--9291Chr04:33869164..33869188 (25 bp)
TCCGTTTCAGTCTGGTAGTCTGTTC
LOC_Os04g57220
Os.22723.1.S1_a_at--809--8791Chr04:33869144..33869168 (25 bp)
TGTTCTACCTGACTGTTCTGTTATT
LOC_Os04g57220
Target Sequence 
GGACATGTTCCATTGGCAAGCTACTATTATGGGACCCTCAGACAGCCCATTTGCTGGTGGGGTATTCTTGGTGAACATTC
ATTTCCCACCGGATTATCCTTTTAAACCACCGAAGGTCTCTTTCCGCACCAAGGTTTTCCACCCGAACATTAATAGCAAT
GGCAGCATTTGCCTCGACATCCTCAAGGAACAGTGGAGTCCTGCACTTACCATATCAAAGGTCCTCCTGTCANATTTGTT
CACTGCTGACGGACCCGAACCCCGATGATCCGTTGGTGCCGGAGATTGCTCACATGTACAAGACTGATAGGGCCAAGTAT
GAATCCACCGCTCGCTCCTGGACACAGAAGTACGCCATGGGCTAAAGCCAGCCAAACTGGTGGACGTGTCGAAACCCAAC
GACGTTATCACCTAAATAACCATCAAGTCACCACTCTCCCCCCAACGAAGTATGAATGGACTTTTGAGGGCTGTTGTGCC
CAGTTGAACTCATATGTACCCTACCTTGTGAAGTCCGTTTCAGTCTGGTAGTCTGTTCTACCTGACTGTTCTGTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22723.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis