Browse Element(s) Details


Os.2289.1.S1_at

Description gb:AK121238.1
DB_XREF= gi:37990861
TID=Os.2289.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2289 (NCBI UniGene Cluster)
UG_TITLE=Cytochrome P450 mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023096A02, full insert sequence.
FL= gb:AK121238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3931011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39250OsAffx.32091.1.S1_at8/1112+24126935..24127811hypothetical protein
LOC_Os12g39260NANA12+24129827..24134840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39270NANA12+24135400..24137958hypothetical protein
LOC_Os12g39280OsAffx.17637.1.S1_at5/1112+24141946..24142320hypothetical protein
LOC_Os12g39290Os.55478.1.S1_at1/1112+24143716..24145049hypothetical protein
LOC_Os12g39300OsAffx.32093.1.S1_at11/1112+24147048..24148760Cytochrome P450 family protein, expressed
LOC_Os12g39300OsAffx.20024.1.S1_x_at1/1112+24147048..24148760Cytochrome P450 family protein, expressed
LOC_Os12g39310Os.2289.1.S1_at11/1112+24150712..24152998Cytochrome P450 family protein, expressed
LOC_Os12g39320Os.24577.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.5169.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.34829.1.S1_at1/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39330Os.56201.1.S1_at11/1112+24169201..24170641AP2 domain containing protein, expressed
LOC_Os12g39340Os.57018.1.S1_at11/1112+24171221..24174707glycosyl transferase, group 1 family protein, expressed
LOC_Os12g39350NANA12+24175111..24175722hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2289.1.S1_at--757--7771Chr12:24151231..24151255 (25 bp)
GGTGCATCATCACGGAGACGCTCCG
LOC_Os12g39310
Os.2289.1.S1_at--776--1871Chr12:24151174..24151198 (25 bp)
ACGAGGCGTCACGTGACTGCATGGT
LOC_Os12g39310
Os.2289.1.S1_at--220--1971Chr12:24151159..24151183 (25 bp)
ACTGCATGGTCGCTGGACACGTCAT
LOC_Os12g39310
Os.2289.1.S1_at--265--811Chr12:24151121..24151145 (25 bp)
ATGGTGTTGGTCGACGTGTACTCCA
LOC_Os12g39310
Os.2289.1.S1_at--1087--5751Chr12:24151109..24151133 (25 bp)
GACGTGTACTCCATGCAGCGGGATC
LOC_Os12g39310
Os.2289.1.S1_at--419--2831Chr12:24151061..24151085 (25 bp)
AAGTTCATACCCGAGAGGTTCAAGG
LOC_Os12g39310
Os.2289.1.S1_at--497--3971Chr12:24150975..24150999 (25 bp)
CGGTGAAGGCCTTGCTCTTAGGACG
LOC_Os12g39310
Os.2289.1.S1_at--1034--1111Chr12:24150878..24150902 (25 bp)
AGTGAAGGTTCTGGGCTCACCATGC
LOC_Os12g39310
Os.2289.1.S1_at--497--4431Chr12:24150833..24150857 (25 bp)
GCCATGTGCCTACCACGTGTGGAGA
LOC_Os12g39310
Os.2289.1.S1_at--59--6111Chr12:24150806..24150830 (25 bp)
GAGTCTGTGCTCAAAAGTCTCTAGA
LOC_Os12g39310
Os.2289.1.S1_at--816--9931Chr12:24150764..24150788 (25 bp)
TACGTTATAGGATCTGTCACGCCAA
LOC_Os12g39310
Target Sequence 
GGTGCATCATCACGGAGACGCTCCGGCTGTACCCTCTAGCCCCGCACCTTGTCCCGCACGAGGCGTCACGTGACTGCATG
GTCGCTGGACACGTCATCGCACGCGGGACGATGGTGTTGGTCGACGTGTACTCCATGCAGCGGGATCCCCGTGTTTGGGA
GGACCCGGACAAGTTCATACCCGAGAGGTTCAAGGGTTTCAAAGTCGATNGAAGTGGGTGGATGATGCCCTTCGGTATGG
GGAGGCGGAAGTGCCCCGGTGAAGGCCTTGCTCTTAGGACGGTNGGGATGGCGCTAGGGGTTATGATACAATGCTTTCAG
TGGGAGCGNNTCGGAAAGAAGAAGGTTGATATGAGTGAAGGTTCTGGGCTCACCATGCCTANGGCCGTGCCTCTCATGGC
CATGTGCCTACCACGTGTGGAGATGGAGTCTGTGCTCAAAAGTCTCTAGAAATTTTTTTTTCTTTNATACGTTATAGGAT
CTGTCACGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis